Started by upstream project "BIOFORMATS-test-repo" build number 235
originally caused by:
Started by upstream project "Trigger" build number 260
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18320708995263958888.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36867_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:20:39,070 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:20:39,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:20:39,072 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:39,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:39,074 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:20:39,074 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:20:39,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:20:39,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:39,075 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:39,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:20:39,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:20:39,076 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:20:39,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:20:39,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:20:39,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:20:39,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:20:39,274 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:20:39,274 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:20:39,274 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:20:39,274 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:20:39,275 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:20:39,275 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:20:39,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-26 01:20:39,284] [main] java.version = 11.0.16
[testng] 01:20:39,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:20:39,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:39,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-26_01-20-39.log]
[testng] 01:20:39,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-26 01:20:39,341] [main] testng.directory = /data
[testng] [2024-10-26 01:20:39,342] [main] testng.configDirectory = /config
[testng] [2024-10-26 01:20:39,352] [main] testng.multiplier = 1.0
[testng] [2024-10-26 01:20:39,353] [main] testng.in-memory = false
[testng] [2024-10-26 01:20:39,353] [main] testng.allow-missing = false
[testng] [2024-10-26 01:20:39,353] [main] user.language = en
[testng] [2024-10-26 01:20:39,353] [main] user.country = ${user.country}
[testng] [2024-10-26 01:20:39,353] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-26 01:21:03,952] [main] ----------------------------------------
[testng] [2024-10-26 01:21:03,952] [main] Total files: 315
[testng] [2024-10-26 01:21:03,952] [main] Scan time: 24.599 s (78 ms/file)
[testng] [2024-10-26 01:21:03,952] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-26 01:31:18,582] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] 01:31:18,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:31:18,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:18,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-26_01-31-18.log]
[testng] 01:31:18,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1989c7 - End of configuration.
[testng] [2024-10-26 01:31:19,091] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:31:19,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:31:19,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:19,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-26_01-31-19.log]
[testng] 01:31:19,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51133498 - End of configuration.
[testng] [2024-10-26 01:31:19,271] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] 01:31:19,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:31:19,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:19,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-26_01-31-19.log]
[testng] 01:31:19,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c7d56f - End of configuration.
[testng] [2024-10-26 01:31:19,427] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] 01:31:19,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:31:19,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:19,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-26_01-31-19.log]
[testng] 01:31:19,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b6410d - End of configuration.
[testng] [2024-10-26 01:31:19,574] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] 01:31:19,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:31:19,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:19,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-26_01-31-19.log]
[testng] 01:31:19,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24732e6c - End of configuration.
[testng] [2024-10-26 01:31:19,657] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] 01:31:19,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:31:19,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:19,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-26_01-31-19.log]
[testng] 01:31:19,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52d3c3f5 - End of configuration.
[testng] [2024-10-26 01:31:19,818] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] 01:31:19,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:31:19,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:19,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-26_01-31-19.log]
[testng] 01:31:19,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dde365f - End of configuration.
[testng] [2024-10-26 01:31:20,017] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] 01:31:20,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:31:20,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:20,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-26_01-31-20.log]
[testng] 01:31:20,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039b45f - End of configuration.
[testng] [2024-10-26 01:31:20,215] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] 01:31:20,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:31:20,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:20,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-26_01-31-20.log]
[testng] 01:31:20,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e9a5394 - End of configuration.
[testng] [2024-10-26 01:31:20,382] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] 01:31:20,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:31:20,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:20,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-26_01-31-20.log]
[testng] 01:31:20,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f96a56d - End of configuration.
[testng] [2024-10-26 01:31:20,642] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] 01:31:20,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:31:20,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:20,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-26_01-31-20.log]
[testng] 01:31:20,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@400f8d64 - End of configuration.
[testng] [2024-10-26 01:31:20,893] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir:
[testng] 01:31:20,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:31:20,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:20,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-26_01-31-20.log]
[testng] 01:31:20,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f2b099e - End of configuration.
[testng] [2024-10-26 01:31:24,336] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-26 01:31:25,761] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-26 01:31:26,105] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-26 01:31:28,573] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-26 01:31:28,753] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-10-26 01:31:29,087] [pool-1-thread-7] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-26 01:31:29,462] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-10-26 01:31:29,486] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-10-26 01:31:30,515] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-10-26 01:31:31,033] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-26 01:31:35,163] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-26 01:31:36,709] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-26 01:31:37,098] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-26 01:31:37,714] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-26 01:31:38,385] [pool-1-thread-6] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-10-26 01:31:38,941] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-10-26 01:31:40,703] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-26 01:31:42,503] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-10-26 01:31:43,088] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-26 01:31:43,601] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-10-26 01:31:44,086] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-26 01:31:45,993] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-26 01:31:46,710] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-10-26 01:31:48,830] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-26 01:31:50,181] [pool-1-thread-6] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-26 01:31:50,622] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-10-26 01:31:51,177] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-26 01:31:54,520] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-26 01:31:54,918] [pool-1-thread-3] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-26 01:31:55,519] [pool-1-thread-6] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-26 01:31:55,933] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-26 01:31:58,986] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-10-26 01:31:59,932] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-26 01:32:00,829] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-26 01:32:01,194] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-26 01:32:02,707] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-26 01:32:03,977] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-26 01:32:04,605] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-26 01:32:05,660] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-10-26 01:32:06,275] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-26 01:32:07,355] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-26 01:32:07,833] [pool-1-thread-4] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-10-26 01:32:29,460] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-26 01:32:29,752] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-10-26 01:32:30,084] [pool-1-thread-7] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-26 01:32:58,376] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-26 01:33:00,954] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-26 01:33:01,616] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-26 01:33:02,137] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-26 01:33:03,241] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-26 01:33:05,588] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-10-26 01:33:07,405] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-10-26 01:33:08,365] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-10-26 01:33:09,597] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-10-26 01:33:10,122] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-26 01:33:11,451] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-26 01:33:11,877] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-26 01:33:14,830] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-26 01:33:17,762] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-26 01:33:18,306] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-26 01:33:19,109] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-10-26 01:33:20,287] [pool-1-thread-10] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-26 01:33:26,328] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-26 01:33:27,391] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-10-26 01:33:28,707] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-26 01:33:29,891] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-10-26 01:33:32,162] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-26 01:33:32,552] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-26 01:33:35,852] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-26 01:33:37,445] [pool-1-thread-2] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-26 01:33:38,258] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-26 01:33:40,248] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-26 01:33:40,831] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-26 01:33:41,524] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-10-26 01:33:45,429] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-10-26 01:33:46,506] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-26 01:33:47,248] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-26 01:33:47,902] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-10-26 01:33:48,785] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-26 01:33:50,981] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-26 01:33:53,659] [pool-1-thread-2] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-26 01:33:55,742] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-26 01:33:57,182] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-10-26 01:33:58,020] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-26 01:33:58,820] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-26 01:34:01,838] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-10-26 01:34:04,481] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-26 01:34:05,519] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-26 01:34:10,349] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-26 01:34:12,197] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-26 01:34:14,326] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-26 01:34:16,876] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-26 01:34:17,936] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-26 01:35:12,113] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-10-26 01:35:12,675] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-26 01:35:13,447] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-26 01:35:14,785] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-26 01:35:16,399] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-26 01:35:22,005] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-10-26 01:35:22,531] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-26 01:35:23,000] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-26 01:35:24,462] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-26 01:35:28,006] [pool-1-thread-11] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-26 01:35:29,148] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-10-26 01:35:32,705] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-26 01:35:33,143] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-26 01:35:33,538] [pool-1-thread-3] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-26 01:35:37,423] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-26 01:35:38,106] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-26 01:35:40,232] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-26 01:35:40,796] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-26 01:35:41,446] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-26 01:35:44,342] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-26 01:35:44,948] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-10-26 01:35:45,801] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-26 01:35:47,004] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-26 01:35:49,043] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-26 01:35:50,707] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-10-26 01:35:51,106] [pool-1-thread-11] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-26 01:35:51,735] [pool-1-thread-2] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-26 01:35:53,007] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-26 01:35:56,833] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-10-26 01:35:58,632] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-26 01:35:59,754] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-26 01:36:00,341] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-26 01:36:00,778] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-26 01:36:04,436] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-26 01:36:05,185] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-26 01:36:05,701] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-26 01:36:06,388] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-10-26 01:36:06,889] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-26 01:36:10,156] [pool-1-thread-3] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-26 01:36:10,288] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-26 01:36:10,756] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-26 01:36:11,326] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-26 01:36:12,697] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-26 01:36:14,355] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-26 01:36:17,115] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-26 01:36:18,446] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-26 01:36:19,912] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-26 01:36:20,643] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-10-26 01:36:22,060] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-26 01:36:24,021] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-26 01:36:29,700] [pool-1-thread-11] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-10-26 01:36:30,970] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-26 01:36:31,346] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-26 01:36:32,202] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-10-26 01:36:35,456] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-26 01:36:39,422] [pool-1-thread-6] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-26 01:36:40,406] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-26 01:36:41,238] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-10-26 01:36:42,057] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-10-26 01:36:45,379] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-26 01:36:46,808] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-26 01:36:47,181] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-26 01:36:48,099] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-26 01:36:49,183] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-26 01:37:00,683] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-26 01:37:02,125] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-26 01:37:02,760] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-26 01:37:03,174] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-26 01:37:03,971] [pool-1-thread-5] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-10-26 01:37:08,410] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-26 01:37:09,249] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-26 01:37:10,987] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-26 01:37:11,780] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-26 01:37:15,512] [pool-1-thread-7] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-26 01:37:20,686] [pool-1-thread-6] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-10-26 01:37:23,252] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-10-26 01:37:24,652] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-10-26 01:37:26,310] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-26 01:37:27,756] [pool-1-thread-6] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-26 01:37:28,368] [pool-1-thread-3] Initializing /data/qa-17335/1.oir:
[testng] [2024-10-26 01:37:29,427] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-26 01:37:31,815] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-26 01:37:33,256] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-26 01:37:34,570] [pool-1-thread-3] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-26 01:37:54,282] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-26 01:37:57,674] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-10-26 01:37:58,304] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 51 minutes 46 seconds
Finished: SUCCESS