Started by upstream project "BIOFORMATS-test-repo" build number 235
originally caused by:
Started by upstream project "Trigger" build number 260
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2404088539940922448.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_36884_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:34:45,815 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:34:45,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:34:45,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:34:45,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:34:45,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:34:45,818 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:34:45,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:34:45,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:34:45,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:34:45,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:34:45,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:34:45,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:34:45,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:34:45,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:34:46,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:34:46,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:34:46,020 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:34:46,020 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:34:46,020 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:34:46,020 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:34:46,021 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:34:46,021 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:34:46,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-26 01:34:46,031] [main] java.version = 11.0.16
[testng] 01:34:46,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:34:46,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:34:46,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-26_01-34-46.log]
[testng] 01:34:46,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-10-26 01:34:46,080] [main] testng.directory = /data
[testng] [2024-10-26 01:34:46,080] [main] testng.configDirectory = /config
[testng] [2024-10-26 01:34:46,090] [main] testng.multiplier = 1.0
[testng] [2024-10-26 01:34:46,092] [main] testng.in-memory = false
[testng] [2024-10-26 01:34:46,092] [main] testng.allow-missing = false
[testng] [2024-10-26 01:34:46,092] [main] user.language = en
[testng] [2024-10-26 01:34:46,092] [main] user.country = ${user.country}
[testng] [2024-10-26 01:34:46,092] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-26 01:34:50,520] [main] ----------------------------------------
[testng] [2024-10-26 01:34:50,521] [main] Total files: 21
[testng] [2024-10-26 01:34:50,521] [main] Scan time: 4.428 s (210 ms/file)
[testng] [2024-10-26 01:34:50,521] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-26 01:35:01,942] [pool-1-thread-1] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 01:35:01,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:35:01,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:01,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-26_01-35-01.log]
[testng] 01:35:01,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@635c482e - End of configuration.
[testng] [2024-10-26 01:35:02,757] [pool-1-thread-12] Initializing /data/venu/VENU_Four.TIF:
[testng] 01:35:02,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:35:02,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:02,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-26_01-35-02.log]
[testng] 01:35:02,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a15ad58 - End of configuration.
[testng] [2024-10-26 01:35:03,659] [pool-1-thread-11] Initializing /data/venu/VENU02.IMG:
[testng] 01:35:03,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:35:03,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:03,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-26_01-35-03.log]
[testng] 01:35:03,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10cca014 - End of configuration.
[testng] [2024-10-26 01:35:03,932] [pool-1-thread-10] Initializing /data/venu/VENU.TIF:
[testng] 01:35:03,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:35:03,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:03,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-26_01-35-03.log]
[testng] 01:35:03,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c0eb784 - End of configuration.
[testng] [2024-10-26 01:35:04,650] [pool-1-thread-9] Initializing /data/venu/VENU_Five.TIF:
[testng] 01:35:04,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:35:04,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:04,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-26_01-35-04.log]
[testng] 01:35:04,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4db83d9a - End of configuration.
[testng] [2024-10-26 01:35:05,095] [pool-1-thread-8] Initializing /data/venu/VENU_Eight.TIF:
[testng] 01:35:05,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:35:05,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:05,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-26_01-35-05.log]
[testng] 01:35:05,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@198e8814 - End of configuration.
[testng] [2024-10-26 01:35:05,514] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 01:35:05,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:35:05,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:05,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-26_01-35-05.log]
[testng] 01:35:05,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@335a23a4 - End of configuration.
[testng] [2024-10-26 01:35:05,956] [pool-1-thread-6] Initializing /data/venu/VENU01.IMG:
[testng] 01:35:05,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:35:05,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:05,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-26_01-35-05.log]
[testng] 01:35:05,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75afd2ce - End of configuration.
[testng] [2024-10-26 01:35:06,100] [pool-1-thread-5] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 01:35:06,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:35:06,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:06,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-26_01-35-06.log]
[testng] 01:35:06,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1789afe6 - End of configuration.
[testng] [2024-10-26 01:35:06,592] [pool-1-thread-4] Initializing /data/venu/VENU03.TIF:
[testng] 01:35:06,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:35:06,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:06,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-26_01-35-06.log]
[testng] 01:35:06,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c8dc665 - End of configuration.
[testng] [2024-10-26 01:35:06,976] [pool-1-thread-3] Initializing /data/venu/VENU02.TIF:
[testng] 01:35:06,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:35:06,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:06,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-26_01-35-06.log]
[testng] 01:35:06,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486e00c2 - End of configuration.
[testng] [2024-10-26 01:35:07,384] [pool-1-thread-2] Initializing /data/venu/VENU03.IMG:
[testng] 01:35:07,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:35:07,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:07,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-26_01-35-07.log]
[testng] 01:35:07,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e203ee - End of configuration.
[testng] [2024-10-26 01:35:11,283] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF:
[testng] [2024-10-26 01:35:12,122] [pool-1-thread-2] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] [2024-10-26 01:35:12,916] [pool-1-thread-11] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] [2024-10-26 01:35:14,904] [pool-1-thread-10] Initializing /data/steffen/Batman_008.tif:
[testng] [2024-10-26 01:35:15,575] [pool-1-thread-4] Initializing /data/venu/VENU_Seven.TIF:
[testng] [2024-10-26 01:35:16,302] [pool-1-thread-1] Initializing /data/venu/VENU01.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 41 seconds
Finished: SUCCESS