Started by upstream project "BIOFORMATS-test-repo" build number 236
originally caused by:
Started by upstream project "Trigger" build number 261
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins13960082694822419965.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37119_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:33:19,112 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:33:19,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 02:33:19,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:33:19,115 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:33:19,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:33:19,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:33:19,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:33:19,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:33:19,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:33:19,117 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:33:19,117 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:33:19,117 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:33:19,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:33:19,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:33:19,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:33:19,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:33:19,296 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:33:19,296 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:33:19,296 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:33:19,296 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:33:19,297 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 02:33:19,297 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 02:33:19,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-27 02:33:19,305] [main] java.version = 17.0.2
[testng] 02:33:19,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:33:19,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:19,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_02-33-19.log]
[testng] 02:33:19,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-27 02:33:19,350] [main] testng.directory = /data
[testng] [2024-10-27 02:33:19,350] [main] testng.configDirectory = /config
[testng] [2024-10-27 02:33:19,358] [main] testng.multiplier = 1.0
[testng] [2024-10-27 02:33:19,359] [main] testng.in-memory = false
[testng] [2024-10-27 02:33:19,359] [main] testng.allow-missing = false
[testng] [2024-10-27 02:33:19,359] [main] user.language = en
[testng] [2024-10-27 02:33:19,360] [main] user.country = ${user.country}
[testng] [2024-10-27 02:33:19,360] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-27 02:33:21,276] [main] ----------------------------------------
[testng] [2024-10-27 02:33:21,276] [main] Total files: 14
[testng] [2024-10-27 02:33:21,276] [main] Scan time: 1.916 s (136 ms/file)
[testng] [2024-10-27 02:33:21,276] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-27 02:33:34,109] [pool-1-thread-1] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif:
[testng] 02:33:34,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:33:34,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:34,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_02-33-34.log]
[testng] 02:33:34,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f6858c3 - End of configuration.
[testng] [2024-10-27 02:33:34,540] [pool-1-thread-12] Initializing /data/shalin/40xNA0.6-512x512.tif:
[testng] 02:33:34,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:33:34,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:34,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_02-33-34.log]
[testng] 02:33:34,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@308ac299 - End of configuration.
[testng] [2024-10-27 02:33:35,008] [pool-1-thread-11] Initializing /data/timg/LiveOne.tif:
[testng] 02:33:35,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:33:35,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:35,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_02-33-35.log]
[testng] 02:33:35,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d816635 - End of configuration.
[testng] [2024-10-27 02:33:35,346] [pool-1-thread-10] Initializing /data/timg/eric-three.tif:
[testng] 02:33:35,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:33:35,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:35,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_02-33-35.log]
[testng] 02:33:35,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c2cbd1e - End of configuration.
[testng] [2024-10-27 02:33:35,745] [pool-1-thread-9] Initializing /data/aaron/olympus_fv500.tif:
[testng] 02:33:35,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:33:35,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:35,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_02-33-35.log]
[testng] 02:33:35,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1141181a - End of configuration.
[testng] [2024-10-27 02:33:36,209] [pool-1-thread-8] Initializing /data/timg/eric-one.tif:
[testng] 02:33:36,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:33:36,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:36,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_02-33-36.log]
[testng] 02:33:36,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672c62a - End of configuration.
[testng] [2024-10-27 02:33:36,670] [pool-1-thread-7] Initializing /data/timg/eric-three-projection.tif:
[testng] 02:33:36,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:33:36,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:36,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_02-33-36.log]
[testng] 02:33:36,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c793665 - End of configuration.
[testng] [2024-10-27 02:33:37,046] [pool-1-thread-6] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF:
[testng] 02:33:37,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:33:37,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:37,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_02-33-37.log]
[testng] 02:33:37,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@500947e1 - End of configuration.
[testng] [2024-10-27 02:33:37,572] [pool-1-thread-5] Initializing /data/timg/eric-one-3d.tif:
[testng] 02:33:37,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:33:37,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:37,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_02-33-37.log]
[testng] 02:33:37,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e3e2091 - End of configuration.
[testng] [2024-10-27 02:33:38,026] [pool-1-thread-4] Initializing /data/timg/LiveTwo.tif:
[testng] 02:33:38,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:33:38,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:38,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_02-33-38.log]
[testng] 02:33:38,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bff7d00 - End of configuration.
[testng] [2024-10-27 02:33:38,402] [pool-1-thread-3] Initializing /data/timg/LiveThree-xyzt.tif:
[testng] 02:33:38,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:33:38,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:38,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_02-33-38.log]
[testng] 02:33:38,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10afdf7 - End of configuration.
[testng] [2024-10-27 02:33:38,803] [pool-1-thread-2] Initializing /data/timg/E1-v2(11 som).tif:
[testng] 02:33:38,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:33:38,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:33:38,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_02-33-38.log]
[testng] 02:33:38,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@581dc0fc - End of configuration.
[testng] [2024-10-27 02:33:43,127] [pool-1-thread-11] Initializing /data/brian/DBTRG 2X 1a-1.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 31 seconds
Finished: SUCCESS