Started by upstream project "BIOFORMATS-test-repo" build number 236
originally caused by:
 Started by upstream project "Trigger" build number 261
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins339822095106250573.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37154_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:09:56,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:09:56,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 03:09:56,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:09:56,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:09:56,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:09:56,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:09:56,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:09:56,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:09:56,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:09:56,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:09:56,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:09:56,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:09:56,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:09:56,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:09:56,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:09:56,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:09:56,218 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:09:56,218 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:09:56,218 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:09:56,219 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:09:56,219 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 03:09:56,220 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 03:09:56,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-27 03:09:56,228] [main] java.version = 17.0.2
   [testng] 03:09:56,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:09:56,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:09:56,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_03-09-56.log]
   [testng] 03:09:56,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-27 03:09:56,274] [main] testng.directory = /data
   [testng] [2024-10-27 03:09:56,274] [main] testng.configDirectory = /config
   [testng] [2024-10-27 03:09:56,282] [main] testng.multiplier = 1.0
   [testng] [2024-10-27 03:09:56,283] [main] testng.in-memory = false
   [testng] [2024-10-27 03:09:56,283] [main] testng.allow-missing = false
   [testng] [2024-10-27 03:09:56,283] [main] user.language = en
   [testng] [2024-10-27 03:09:56,283] [main] user.country = ${user.country}
   [testng] [2024-10-27 03:09:56,283] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-27 03:09:59,100] [main] ----------------------------------------
   [testng] [2024-10-27 03:09:59,100] [main] Total files: 32
   [testng] [2024-10-27 03:09:59,100] [main] Scan time: 2.817 s (88 ms/file)
   [testng] [2024-10-27 03:09:59,100] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 32 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-27 03:10:13,246] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: 
   [testng] 03:10:13,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:10:13,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:13,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_03-10-13.log]
   [testng] 03:10:13,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d036179 - End of configuration.
   [testng] [2024-10-27 03:10:13,906] [pool-1-thread-12] Initializing /data/qa-29459/bad.jpg: 
   [testng] 03:10:13,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:10:13,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:13,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_03-10-13.log]
   [testng] 03:10:13,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8fc004b - End of configuration.
   [testng] [2024-10-27 03:10:13,998] [pool-1-thread-11] Initializing /data/david/Opened in imageJ.tiff: 
   [testng] 03:10:13,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:10:13,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:13,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_03-10-13.log]
   [testng] 03:10:13,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e280cd3 - End of configuration.
   [testng] [2024-10-27 03:10:14,830] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: 
   [testng] 03:10:14,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:10:14,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:14,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_03-10-14.log]
   [testng] 03:10:14,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39a4c4b7 - End of configuration.
   [testng] [2024-10-27 03:10:15,645] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: 
   [testng] 03:10:15,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:10:15,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:15,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_03-10-15.log]
   [testng] 03:10:15,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1961b56a - End of configuration.
   [testng] [2024-10-27 03:10:16,441] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: 
   [testng] 03:10:16,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:10:16,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:16,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_03-10-16.log]
   [testng] 03:10:16,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@edbdead - End of configuration.
   [testng] [2024-10-27 03:10:16,682] [pool-1-thread-7] Initializing /data/samples/imagesEight.1sc: 
   [testng] 03:10:16,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:10:16,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:16,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_03-10-16.log]
   [testng] 03:10:16,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b532 - End of configuration.
   [testng] [2024-10-27 03:10:16,909] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: 
   [testng] 03:10:16,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:10:16,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:16,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_03-10-16.log]
   [testng] 03:10:16,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3591a901 - End of configuration.
   [testng] [2024-10-27 03:10:17,680] [pool-1-thread-5] Initializing /data/keith/test2.1sc: 
   [testng] 03:10:17,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:10:17,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:17,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_03-10-17.log]
   [testng] 03:10:17,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a6713e - End of configuration.
   [testng] [2024-10-27 03:10:17,907] [pool-1-thread-4] Initializing /data/david/Original Biorad Gel format file.1sc: 
   [testng] 03:10:17,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:10:17,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:17,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_03-10-17.log]
   [testng] 03:10:17,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e421d6b - End of configuration.
   [testng] [2024-10-27 03:10:18,143] [pool-1-thread-3] Initializing /data/david/Converted in Quantity One (Biorad).tiff: 
   [testng] 03:10:18,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:10:18,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:18,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_03-10-18.log]
   [testng] 03:10:18,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7112b02a - End of configuration.
   [testng] [2024-10-27 03:10:18,989] [pool-1-thread-2] Initializing /data/geert/bad example1.1sc: 
   [testng] 03:10:18,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:10:18,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:18,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_03-10-18.log]
   [testng] 03:10:18,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a838257 - End of configuration.
   [testng] [2024-10-27 03:10:22,234] [pool-1-thread-12] Initializing /data/qa-29469/good.1sc: 
   [testng] [2024-10-27 03:10:22,482] [pool-1-thread-7] Initializing /data/qa-29469/bad3.1sc: 
   [testng] [2024-10-27 03:10:22,758] [pool-1-thread-4] Initializing /data/qa-29459/bad.1sc: 
   [testng] [2024-10-27 03:10:23,026] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc.jpg: 
   [testng] [2024-10-27 03:10:23,126] [pool-1-thread-2] Initializing /data/adrian/test_img.1sc: 
   [testng] [2024-10-27 03:10:23,376] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 59min: 
   [testng] [2024-10-27 03:10:23,636] [pool-1-thread-1] Initializing /data/keith/pg020410saur3.1sc: 
   [testng] [2024-10-27 03:10:26,066] [pool-1-thread-1] Initializing /data/keith/PF020426MRSA v2.1sc: 
   [testng] [2024-10-27 03:10:26,873] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min: 
   [testng] [2024-10-27 03:10:27,243] [pool-1-thread-7] Initializing /data/keith/test.1sc: 
   [testng] [2024-10-27 03:10:27,506] [pool-1-thread-4] Initializing /data/keith/PF020328saur v3.1sc: 
   [testng] [2024-10-27 03:10:27,721] [pool-1-thread-5] Initializing /data/geert/good example1.1sc.jpg: 
   [testng] [2024-10-27 03:10:27,824] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 57min: 
   [testng] [2024-10-27 03:10:28,084] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 18min: 
   [testng] [2024-10-27 03:10:28,324] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: 
   [testng] [2024-10-27 03:10:28,563] [pool-1-thread-11] Initializing /data/geert/bad example1.jpg: 
   [testng] [2024-10-27 03:10:28,666] [pool-1-thread-9] Initializing /data/qa-29469/bad2.1sc: 
   [testng] [2024-10-27 03:10:28,898] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc: 
   [testng] [2024-10-27 03:10:29,134] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: 
   [testng] [2024-10-27 03:10:31,656] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1696, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 46 seconds
Finished: SUCCESS