Started by upstream project "BIOFORMATS-test-repo" build number 236
originally caused by:
Started by upstream project "Trigger" build number 261
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins5258484772592225132.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37178_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:06:08,687 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:06:08,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 04:06:08,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:06:08,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:06:08,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:06:08,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:06:08,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:06:08,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:06:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:06:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:06:08,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:06:08,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:06:08,880 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:06:08,880 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:06:08,881 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:06:08,881 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:06:08,881 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 04:06:08,882 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 04:06:08,882 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-27 04:06:08,890] [main] java.version = 17.0.2
[testng] 04:06:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:06:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:08,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_04-06-08.log]
[testng] 04:06:08,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-27 04:06:08,938] [main] testng.directory = /data
[testng] [2024-10-27 04:06:08,938] [main] testng.configDirectory = /config
[testng] [2024-10-27 04:06:08,947] [main] testng.multiplier = 1.0
[testng] [2024-10-27 04:06:08,948] [main] testng.in-memory = false
[testng] [2024-10-27 04:06:08,948] [main] testng.allow-missing = false
[testng] [2024-10-27 04:06:08,948] [main] user.language = en
[testng] [2024-10-27 04:06:08,948] [main] user.country = ${user.country}
[testng] [2024-10-27 04:06:08,948] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-27 04:06:13,513] [main] ----------------------------------------
[testng] [2024-10-27 04:06:13,513] [main] Total files: 22
[testng] [2024-10-27 04:06:13,513] [main] Scan time: 4.565 s (207 ms/file)
[testng] [2024-10-27 04:06:13,513] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-27 04:06:27,932] [pool-1-thread-1] Initializing /data/converted/clown.ipw:
[testng] 04:06:27,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:06:27,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:27,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_04-06-27.log]
[testng] 04:06:27,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28298357 - End of configuration.
[testng] [2024-10-27 04:06:28,235] [pool-1-thread-12] Initializing /data/converted/dub01.seq:
[testng] 04:06:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:06:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:28,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_04-06-28.log]
[testng] 04:06:28,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6081c8 - End of configuration.
[testng] [2024-10-27 04:06:28,578] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF:
[testng] 04:06:28,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:06:28,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:28,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_04-06-28.log]
[testng] 04:06:28,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f434164 - End of configuration.
[testng] [2024-10-27 04:06:29,370] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 04:06:29,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:06:29,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:29,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_04-06-29.log]
[testng] 04:06:29,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d30f7c5 - End of configuration.
[testng] [2024-10-27 04:06:29,709] [pool-1-thread-9] Initializing /data/converted/clown8c.seq:
[testng] 04:06:29,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:06:29,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:29,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_04-06-29.log]
[testng] 04:06:29,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71dca664 - End of configuration.
[testng] [2024-10-27 04:06:30,056] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq:
[testng] 04:06:30,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:06:30,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:30,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_04-06-30.log]
[testng] 04:06:30,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27761594 - End of configuration.
[testng] [2024-10-27 04:06:30,476] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw:
[testng] 04:06:30,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:06:30,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:30,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_04-06-30.log]
[testng] 04:06:30,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@134e6961 - End of configuration.
[testng] [2024-10-27 04:06:30,817] [pool-1-thread-6] Initializing /data/converted/clown8c.tif:
[testng] 04:06:30,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:06:30,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:30,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_04-06-30.log]
[testng] 04:06:30,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@259294a0 - End of configuration.
[testng] [2024-10-27 04:06:31,700] [pool-1-thread-5] Initializing /data/converted/dub01.ipw:
[testng] 04:06:31,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:06:31,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:31,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_04-06-31.log]
[testng] 04:06:31,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7ac6fa - End of configuration.
[testng] [2024-10-27 04:06:32,011] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 04:06:32,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:06:32,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:32,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_04-06-32.log]
[testng] 04:06:32,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a25cb77 - End of configuration.
[testng] [2024-10-27 04:06:32,335] [pool-1-thread-3] Initializing /data/converted/dub01.pic:
[testng] 04:06:32,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:06:32,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:32,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_04-06-32.log]
[testng] 04:06:32,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9f6443 - End of configuration.
[testng] [2024-10-27 04:06:32,657] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq:
[testng] 04:06:32,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:06:32,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:06:32,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_04-06-32.log]
[testng] 04:06:32,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2070a583 - End of configuration.
[testng] [2024-10-27 04:06:36,790] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-10-27 04:06:37,600] [pool-1-thread-9] Initializing /data/converted/clown.seq:
[testng] [2024-10-27 04:06:37,933] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ:
[testng] [2024-10-27 04:06:38,244] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-10-27 04:06:39,201] [pool-1-thread-5] Initializing /data/converted/clown8c.ipw:
[testng] [2024-10-27 04:06:39,553] [pool-1-thread-3] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-10-27 04:06:39,873] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF:
[testng] [2024-10-27 04:06:40,697] [pool-1-thread-4] Initializing /data/converted/clown.tif:
[testng] [2024-10-27 04:06:41,035] [pool-1-thread-10] Initializing /data/samples/PROBE.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 31 seconds
Finished: SUCCESS