Started by upstream project "BIOFORMATS-test-repo" build number 237
originally caused by:
Started by upstream project "Trigger" build number 262
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4639994600462000831.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37195_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:24:46,002 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:24:46,004 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:24:46,004 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:24:46,005 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:24:46,006 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:24:46,006 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:24:46,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:24:46,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:24:46,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:24:46,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:24:46,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:24:46,007 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:24:46,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:24:46,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:24:46,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:24:46,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:24:46,312 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:24:46,312 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:24:46,312 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:24:46,313 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:24:46,313 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:24:46,314 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:24:46,314 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 307 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-28 00:24:46,324] [main] java.version = 1.8.0_342
[testng] 00:24:46,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:24:46,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:24:46,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_00-24-46.log]
[testng] 00:24:46,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-28 00:24:46,380] [main] testng.directory = /data
[testng] [2024-10-28 00:24:46,381] [main] testng.configDirectory = /config
[testng] [2024-10-28 00:24:46,393] [main] testng.multiplier = 1.0
[testng] [2024-10-28 00:24:46,393] [main] testng.in-memory = false
[testng] [2024-10-28 00:24:46,393] [main] testng.allow-missing = false
[testng] [2024-10-28 00:24:46,393] [main] user.language = fr
[testng] [2024-10-28 00:24:46,393] [main] user.country = FR
[testng] [2024-10-28 00:24:46,393] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-28 00:25:17,664] [main] ----------------------------------------
[testng] [2024-10-28 00:25:17,664] [main] Total files: 315
[testng] [2024-10-28 00:25:17,664] [main] Scan time: 31.27 s (99 ms/file)
[testng] [2024-10-28 00:25:17,665] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 192 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-28 00:36:05,859] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] 00:36:05,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:36:05,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:05,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_00-36-05.log]
[testng] 00:36:05,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@644a5862 - End of configuration.
[testng] [2024-10-28 00:36:12,590] [pool-1-thread-12] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] 00:36:12,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:36:12,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:12,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_00-36-12.log]
[testng] 00:36:12,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78cd0ec9 - End of configuration.
[testng] [2024-10-28 00:36:12,807] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] 00:36:12,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:36:12,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:12,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_00-36-12.log]
[testng] 00:36:12,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f9fcec7 - End of configuration.
[testng] [2024-10-28 00:36:12,995] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] 00:36:12,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:36:12,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:12,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_00-36-12.log]
[testng] 00:36:12,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4cfcc7 - End of configuration.
[testng] [2024-10-28 00:36:13,203] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 00:36:13,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:36:13,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:13,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_00-36-13.log]
[testng] 00:36:13,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7242262a - End of configuration.
[testng] [2024-10-28 00:36:13,447] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] 00:36:13,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:36:13,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:13,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_00-36-13.log]
[testng] 00:36:13,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@147318dc - End of configuration.
[testng] [2024-10-28 00:36:13,750] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] 00:36:13,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:36:13,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:13,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_00-36-13.log]
[testng] 00:36:13,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24bfa16b - End of configuration.
[testng] [2024-10-28 00:36:13,776] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] 00:36:13,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:36:13,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:13,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_00-36-13.log]
[testng] 00:36:13,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e59464 - End of configuration.
[testng] [2024-10-28 00:36:14,001] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] 00:36:14,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:36:14,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:14,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_00-36-14.log]
[testng] 00:36:14,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c849dd - End of configuration.
[testng] [2024-10-28 00:36:14,354] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.oir:
[testng] 00:36:14,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:36:14,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:14,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_00-36-14.log]
[testng] 00:36:14,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c7a07a8 - End of configuration.
[testng] [2024-10-28 00:36:14,591] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] 00:36:14,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:36:14,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:14,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_00-36-14.log]
[testng] 00:36:14,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79fe228c - End of configuration.
[testng] [2024-10-28 00:36:14,950] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] 00:36:14,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:36:14,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:14,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_00-36-14.log]
[testng] 00:36:14,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14b9a59d - End of configuration.
[testng] [2024-10-28 00:36:17,222] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-10-28 00:36:19,800] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-10-28 00:36:20,795] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-10-28 00:39:34,969] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-10-28 00:39:55,320] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-10-28 00:39:56,118] [pool-1-thread-8] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-10-28 00:39:56,809] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-10-28 00:40:04,253] [pool-1-thread-2] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-10-28 00:40:04,740] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-10-28 00:40:05,508] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-10-28 00:40:07,308] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-10-28 00:40:09,417] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir:
[testng] [2024-10-28 00:40:10,226] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-10-28 00:40:11,265] [pool-1-thread-2] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-10-28 00:40:11,575] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-10-28 00:40:12,238] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-10-28 00:40:12,684] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-10-28 00:40:13,356] [pool-1-thread-7] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-10-28 00:40:19,283] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-10-28 00:40:20,836] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-10-28 00:40:22,274] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-10-28 00:40:24,559] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-10-28 00:40:26,320] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-10-28 00:40:27,052] [pool-1-thread-5] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-10-28 00:40:29,510] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-10-28 00:40:29,937] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-10-28 00:40:31,820] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-10-28 00:40:33,266] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-28 00:40:33,830] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-10-28 00:40:34,419] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-10-28 00:40:36,792] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-10-28 00:40:37,995] [pool-1-thread-5] Initializing /data/qa-17335/1.oir:
[testng] [2024-10-28 00:40:39,815] [pool-1-thread-8] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-10-28 00:40:40,952] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-10-28 00:40:42,327] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-10-28 00:40:44,191] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-10-28 00:40:47,811] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-10-28 00:40:50,177] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-10-28 00:40:52,342] [pool-1-thread-12] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-10-28 00:41:03,927] [pool-1-thread-4] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-10-28 00:41:05,821] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-10-28 00:41:08,213] [pool-1-thread-10] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-10-28 00:41:13,917] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-10-28 00:41:17,853] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-10-28 00:41:18,918] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-10-28 00:41:19,841] [pool-1-thread-2] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-10-28 00:41:23,380] [pool-1-thread-10] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-10-28 00:41:24,837] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-10-28 00:41:25,301] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-10-28 00:41:48,802] [pool-1-thread-11] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-10-28 00:41:49,641] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-10-28 00:41:51,790] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-10-28 00:41:55,586] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-10-28 00:42:00,166] [pool-1-thread-4] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-10-28 00:42:00,785] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-10-28 00:42:03,985] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-10-28 00:42:06,226] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-10-28 00:42:11,001] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-10-28 00:42:14,208] [pool-1-thread-4] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-10-28 00:42:15,099] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-10-28 00:42:18,390] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-10-28 00:42:19,230] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-10-28 00:42:21,704] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-10-28 00:42:23,849] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-10-28 00:42:25,542] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-10-28 00:42:28,657] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-10-28 00:42:29,197] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-10-28 00:42:30,066] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-10-28 00:42:31,120] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-10-28 00:42:33,895] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-10-28 00:42:34,745] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-10-28 00:42:35,601] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-10-28 00:42:38,001] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-10-28 00:42:42,282] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-10-28 00:42:44,903] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-10-28 00:42:46,187] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-10-28 00:42:47,158] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-10-28 00:42:49,320] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir:
[testng] [2024-10-28 00:43:01,131] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-10-28 00:43:04,549] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-10-28 00:43:05,254] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-10-28 00:43:05,497] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-10-28 00:43:06,776] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-10-28 00:43:08,952] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-10-28 00:43:10,852] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-10-28 00:43:11,364] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-10-28 00:43:11,757] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-10-28 00:43:13,931] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-10-28 00:43:14,233] [pool-1-thread-8] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-10-28 00:43:14,587] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-10-28 00:43:18,329] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-10-28 00:43:19,384] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-10-28 00:43:19,837] [pool-1-thread-4] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-10-28 00:43:22,739] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-10-28 00:43:24,947] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-10-28 00:43:27,096] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-10-28 00:43:27,975] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-10-28 00:43:29,004] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-10-28 00:43:30,565] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-10-28 00:43:31,229] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-10-28 00:43:32,557] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-10-28 00:43:32,928] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-10-28 00:43:34,214] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-10-28 00:43:34,825] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-10-28 00:43:36,416] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-10-28 00:43:37,072] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-10-28 00:43:37,552] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-10-28 00:43:38,213] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-10-28 00:43:40,235] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-10-28 00:43:42,121] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-10-28 00:43:43,734] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-10-28 00:43:44,054] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-10-28 00:43:45,743] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-10-28 00:43:47,381] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-10-28 00:43:49,436] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-10-28 00:43:50,510] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-10-28 00:43:51,250] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-10-28 00:43:51,717] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-10-28 00:43:52,124] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-10-28 00:43:52,661] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-10-28 00:43:56,453] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-10-28 00:44:08,934] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-10-28 00:44:09,546] [pool-1-thread-10] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-10-28 00:44:10,047] [pool-1-thread-4] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-10-28 00:44:10,690] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-10-28 00:44:11,234] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-10-28 00:44:11,966] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-10-28 00:44:13,679] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-10-28 00:44:14,023] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-10-28 00:44:16,771] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-10-28 00:44:17,369] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-28 00:44:18,624] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-10-28 00:44:19,298] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-10-28 00:44:20,179] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-10-28 00:44:22,736] [pool-1-thread-10] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-10-28 00:44:32,867] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-10-28 00:44:49,338] [pool-1-thread-7] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-10-28 00:46:06,561] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-10-28 00:46:09,368] [pool-1-thread-4] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-10-28 00:46:10,473] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-10-28 00:46:12,689] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-10-28 00:46:13,733] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-10-28 00:46:17,425] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-10-28 00:46:22,996] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-10-28 00:46:23,489] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-10-28 00:46:24,590] [pool-1-thread-3] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-10-28 00:46:28,052] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-10-28 00:46:34,523] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-10-28 00:46:38,710] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-10-28 00:46:42,867] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-10-28 00:46:45,999] [pool-1-thread-1] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-10-28 00:46:47,527] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-10-28 00:46:50,800] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-10-28 00:46:56,391] [pool-1-thread-11] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-10-28 00:46:58,543] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-10-28 00:47:01,593] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-10-28 00:47:34,377] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-10-28 00:49:36,790] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-10-28 00:49:37,814] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-10-28 00:49:40,452] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-10-28 00:49:41,407] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-10-28 00:49:42,580] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-10-28 00:49:47,893] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-10-28 00:49:52,608] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-10-28 00:49:52,906] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-10-28 00:49:54,495] [pool-1-thread-5] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-10-28 00:49:55,640] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-10-28 00:49:59,287] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-10-28 00:49:59,899] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-10-28 00:50:00,315] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-10-28 00:50:45,279] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-10-28 00:52:28,691] [pool-1-thread-1] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-10-28 00:52:30,020] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-10-28 00:52:32,095] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-10-28 00:52:40,354] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-10-28 00:52:42,440] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-10-28 00:52:44,686] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-10-28 00:52:45,437] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-10-28 00:52:47,561] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-10-28 00:52:50,353] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] 01:38:22,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:38:22,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:38:22,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_01-38-22.log]
[testng] 01:38:22,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c958602 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10176, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 73 minutes 40 seconds
Finished: SUCCESS