Started by upstream project "BIOFORMATS-test-repo" build number 237
originally caused by:
Started by upstream project "Trigger" build number 262
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins9679542830231663828.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37211_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:38:57,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:38:57,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:38:57,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:38:57,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:38:57,653 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:38:57,653 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:38:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:38:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:38:57,653 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration.
[testng] 00:38:57,664 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point
[testng] 00:38:57,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 534 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-28 00:38:57,686] [main] java.version = 1.8.0_342
[testng] 00:38:57,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:38:57,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:57,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_00-38-57.log]
[testng] 00:38:57,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-10-28 00:38:57,744] [main] testng.directory = /data
[testng] [2024-10-28 00:38:57,744] [main] testng.configDirectory = /config
[testng] [2024-10-28 00:38:57,769] [main] testng.multiplier = 1.0
[testng] [2024-10-28 00:38:57,769] [main] testng.in-memory = false
[testng] [2024-10-28 00:38:57,769] [main] testng.allow-missing = false
[testng] [2024-10-28 00:38:57,769] [main] user.language = fr
[testng] [2024-10-28 00:38:57,769] [main] user.country = FR
[testng] [2024-10-28 00:38:57,770] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-10-28 00:41:36,569] [main] ----------------------------------------
[testng] [2024-10-28 00:41:36,569] [main] Total files: 226
[testng] [2024-10-28 00:41:36,569] [main] Scan time: 158.799 s (702 ms/file)
[testng] [2024-10-28 00:41:36,569] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-28 00:43:36,552] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:43:36,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:43:36,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:36,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_00-43-36.log]
[testng] 00:43:36,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bb67e34 - End of configuration.
[testng] [2024-10-28 00:43:36,605] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 00:43:36,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:43:36,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:36,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_00-43-36.log]
[testng] 00:43:36,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13713951 - End of configuration.
[testng] [2024-10-28 00:43:36,901] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif:
[testng] 00:43:36,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:43:36,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:36,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_00-43-36.log]
[testng] 00:43:36,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14edffa6 - End of configuration.
[testng] [2024-10-28 00:43:37,275] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] 00:43:37,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:43:37,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:37,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_00-43-37.log]
[testng] 00:43:37,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa098ef - End of configuration.
[testng] [2024-10-28 00:43:37,380] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] 00:43:37,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:43:37,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:37,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_00-43-37.log]
[testng] 00:43:37,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@547be12 - End of configuration.
[testng] [2024-10-28 00:43:37,984] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 00:43:37,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:43:37,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:37,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_00-43-37.log]
[testng] 00:43:37,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61fbdb7 - End of configuration.
[testng] [2024-10-28 00:43:38,594] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL:
[testng] 00:43:38,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:43:38,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:38,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_00-43-38.log]
[testng] 00:43:38,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@155a8e81 - End of configuration.
[testng] [2024-10-28 00:43:38,710] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] 00:43:38,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:43:38,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:38,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_00-43-38.log]
[testng] 00:43:38,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262d3262 - End of configuration.
[testng] [2024-10-28 00:43:39,153] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 00:43:39,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:43:39,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:39,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_00-43-39.log]
[testng] 00:43:39,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6c16a3 - End of configuration.
[testng] [2024-10-28 00:43:39,297] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 00:43:39,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:43:39,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:39,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_00-43-39.log]
[testng] 00:43:39,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af5bf2d - End of configuration.
[testng] [2024-10-28 00:43:39,419] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 00:43:39,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:43:39,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:39,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_00-43-39.log]
[testng] 00:43:39,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27fd4c2 - End of configuration.
[testng] [2024-10-28 00:43:40,179] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 00:43:40,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:43:40,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:43:40,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_00-43-40.log]
[testng] 00:43:40,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c0f79c7 - End of configuration.
[testng] [2024-10-28 00:43:43,055] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2024-10-28 00:43:43,728] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-10-28 00:43:43,821] [pool-1-thread-4] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-10-28 00:43:43,878] [pool-1-thread-10] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-10-28 00:43:44,538] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-10-28 00:43:46,167] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-10-28 00:43:46,459] [pool-1-thread-1] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] [2024-10-28 00:43:46,748] [pool-1-thread-8] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-10-28 00:43:46,832] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-10-28 00:43:47,353] [pool-1-thread-3] Initializing /data/iplab/Actin.IPL:
[testng] [2024-10-28 00:43:47,430] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.tif:
[testng] [2024-10-28 00:43:47,782] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-10-28 00:43:47,837] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-10-28 00:43:48,817] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-10-28 00:43:49,514] [pool-1-thread-4] Initializing /data/iplab/Color Image.IPL:
[testng] [2024-10-28 00:43:49,766] [pool-1-thread-9] Initializing /data/iplab/16Bit XRay.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 0 seconds
Finished: SUCCESS