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Started by upstream project "BIOFORMATS-test-repo" build number 237 originally caused by: Started by upstream project "Trigger" build number 262 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11601966324518801797.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_37318_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:15:51,826 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:15:51,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:15:51,828 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:51,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:51,829 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:15:51,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:15:51,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:15:51,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:51,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:51,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:15:51,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:15:51,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:15:52,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:15:52,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:15:52,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:15:52,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:15:52,114 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:15:52,114 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:15:52,115 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:15:52,115 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:15:52,115 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:15:52,116 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:15:52,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 286 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-28 03:15:52,127] [main] java.version = 1.8.0_342 [testng] 03:15:52,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:15:52,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:52,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_03-15-52.log] [testng] 03:15:52,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-28 03:15:52,185] [main] testng.directory = /data [testng] [2024-10-28 03:15:52,185] [main] testng.configDirectory = /config [testng] [2024-10-28 03:15:52,199] [main] testng.multiplier = 1.0 [testng] [2024-10-28 03:15:52,199] [main] testng.in-memory = false [testng] [2024-10-28 03:15:52,199] [main] testng.allow-missing = false [testng] [2024-10-28 03:15:52,199] [main] user.language = fr [testng] [2024-10-28 03:15:52,199] [main] user.country = FR [testng] [2024-10-28 03:15:52,199] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-28 03:15:57,030] [main] ---------------------------------------- [testng] [2024-10-28 03:15:57,030] [main] Total files: 32 [testng] [2024-10-28 03:15:57,030] [main] Scan time: 4.831 s (150 ms/file) [testng] [2024-10-28 03:15:57,030] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-28 03:16:22,428] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] 03:16:22,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:16:22,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:22,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_03-16-22.log] [testng] 03:16:22,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36b6e326 - End of configuration. [testng] [2024-10-28 03:16:23,148] [pool-1-thread-12] Initializing /data/keith/test.1sc: [testng] 03:16:23,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:16:23,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:23,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_03-16-23.log] [testng] 03:16:23,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@648724cc - End of configuration. [testng] [2024-10-28 03:16:23,776] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 03:16:23,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:16:23,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:23,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_03-16-23.log] [testng] 03:16:23,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa3c549 - End of configuration. [testng] [2024-10-28 03:16:25,736] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg: [testng] 03:16:25,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:16:25,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:25,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_03-16-25.log] [testng] 03:16:25,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d6827d - End of configuration. [testng] [2024-10-28 03:16:25,922] [pool-1-thread-9] Initializing /data/samples/imagesEight.1sc: [testng] 03:16:25,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:16:25,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:25,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_03-16-25.log] [testng] 03:16:25,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f2846f - End of configuration. [testng] [2024-10-28 03:16:26,387] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 03:16:26,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:16:26,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:26,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_03-16-26.log] [testng] 03:16:26,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71df51c9 - End of configuration. [testng] [2024-10-28 03:16:26,918] [pool-1-thread-7] Initializing /data/keith/PF020328saur v3.1sc: [testng] 03:16:26,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:16:26,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:26,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_03-16-26.log] [testng] 03:16:26,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d4ce197 - End of configuration. [testng] [2024-10-28 03:16:27,430] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 03:16:27,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:16:27,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:27,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_03-16-27.log] [testng] 03:16:27,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23a39483 - End of configuration. [testng] [2024-10-28 03:16:28,063] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] 03:16:28,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:16:28,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:28,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_03-16-28.log] [testng] 03:16:28,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8fc304 - End of configuration. [testng] [2024-10-28 03:16:28,290] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 03:16:28,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:16:28,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:28,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_03-16-28.log] [testng] 03:16:28,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ecf34a2 - End of configuration. [testng] [2024-10-28 03:16:28,915] [pool-1-thread-3] Initializing /data/keith/test2.1sc: [testng] 03:16:28,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:16:28,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:28,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_03-16-28.log] [testng] 03:16:28,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fab45db - End of configuration. [testng] [2024-10-28 03:16:29,393] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 03:16:29,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:16:29,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:29,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_03-16-29.log] [testng] 03:16:29,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f6d9613 - End of configuration. [testng] [2024-10-28 03:16:37,436] [pool-1-thread-9] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-10-28 03:16:38,111] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc: [testng] [2024-10-28 03:16:38,668] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-10-28 03:16:40,691] [pool-1-thread-12] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-10-28 03:16:41,219] [pool-1-thread-1] Initializing /data/qa-29469/good.1sc: [testng] [2024-10-28 03:16:41,745] [pool-1-thread-8] Initializing /data/adrian/test_img.1sc: [testng] [2024-10-28 03:16:42,301] [pool-1-thread-4] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-10-28 03:16:42,857] [pool-1-thread-6] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-10-28 03:16:43,554] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] [2024-10-28 03:16:44,389] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-10-28 03:16:49,142] [pool-1-thread-4] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-10-28 03:16:49,778] [pool-1-thread-6] Initializing /data/qa-29459/bad.jpg: [testng] [2024-10-28 03:16:50,008] [pool-1-thread-9] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-10-28 03:16:51,908] [pool-1-thread-1] Initializing /data/david/Opened in imageJ.tiff: [testng] [2024-10-28 03:16:53,942] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-10-28 03:16:54,481] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-10-28 03:16:56,337] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-10-28 03:16:56,845] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2024-10-28 03:16:57,361] [pool-1-thread-2] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-10-28 03:16:57,918] [pool-1-thread-10] Initializing /data/qa-29459/bad.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 19 seconds Finished: SUCCESS