Started by upstream project "BIOFORMATS-test-repo" build number 237 originally caused by: Started by upstream project "Trigger" build number 262 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9751709433853802339.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_37342_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:19:21,418 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:19:21,419 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:19:21,419 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:19:21,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:19:21,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:19:21,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:19:21,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:19:21,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:19:21,421 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:19:21,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:19:21,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:19:21,422 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:19:21,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:19:21,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:19:21,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:19:21,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:19:21,663 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:19:21,663 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:19:21,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:19:21,664 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:19:21,664 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:19:21,665 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:19:21,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-28 04:19:21,674] [main] java.version = 1.8.0_342 [testng] 04:19:21,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:19:21,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:21,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_04-19-21.log] [testng] 04:19:21,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-28 04:19:21,722] [main] testng.directory = /data [testng] [2024-10-28 04:19:21,722] [main] testng.configDirectory = /config [testng] [2024-10-28 04:19:21,733] [main] testng.multiplier = 1.0 [testng] [2024-10-28 04:19:21,734] [main] testng.in-memory = false [testng] [2024-10-28 04:19:21,734] [main] testng.allow-missing = false [testng] [2024-10-28 04:19:21,734] [main] user.language = fr [testng] [2024-10-28 04:19:21,734] [main] user.country = FR [testng] [2024-10-28 04:19:21,734] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-28 04:19:26,442] [main] ---------------------------------------- [testng] [2024-10-28 04:19:26,442] [main] Total files: 22 [testng] [2024-10-28 04:19:26,442] [main] Scan time: 4.708 s (214 ms/file) [testng] [2024-10-28 04:19:26,442] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-28 04:19:41,635] [pool-1-thread-1] Initializing /data/converted/clown8c.ipw: [testng] 04:19:41,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:19:41,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:41,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_04-19-41.log] [testng] 04:19:41,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@147ad75b - End of configuration. [testng] [2024-10-28 04:19:41,929] [pool-1-thread-12] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:19:41,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:19:41,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:41,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_04-19-41.log] [testng] 04:19:41,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d640936 - End of configuration. [testng] [2024-10-28 04:19:42,270] [pool-1-thread-11] Initializing /data/converted/mitosis-test.seq: [testng] 04:19:42,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:19:42,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:42,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_04-19-42.log] [testng] 04:19:42,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57434933 - End of configuration. [testng] [2024-10-28 04:19:42,584] [pool-1-thread-10] Initializing /data/converted/clown.ipw: [testng] 04:19:42,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:19:42,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:42,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_04-19-42.log] [testng] 04:19:42,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18cda886 - End of configuration. [testng] [2024-10-28 04:19:42,946] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 04:19:42,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:19:42,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:42,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_04-19-42.log] [testng] 04:19:42,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a03854 - End of configuration. [testng] [2024-10-28 04:19:43,283] [pool-1-thread-8] Initializing /data/samples/HEART.SEQ: [testng] 04:19:43,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:19:43,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:43,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_04-19-43.log] [testng] 04:19:43,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2de57a - End of configuration. [testng] [2024-10-28 04:19:43,605] [pool-1-thread-7] Initializing /data/converted/clown8c.tif: [testng] 04:19:43,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:19:43,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:43,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_04-19-43.log] [testng] 04:19:43,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ab93c5f - End of configuration. [testng] [2024-10-28 04:19:44,423] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips: [testng] 04:19:44,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:19:44,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:44,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_04-19-44.log] [testng] 04:19:44,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f06421c - End of configuration. [testng] [2024-10-28 04:19:44,803] [pool-1-thread-5] Initializing /data/samples/TISSUE.TIF: [testng] 04:19:44,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:19:44,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:44,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_04-19-44.log] [testng] 04:19:44,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72bfec5c - End of configuration. [testng] [2024-10-28 04:19:45,628] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] 04:19:45,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:19:45,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:45,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_04-19-45.log] [testng] 04:19:45,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd19772 - End of configuration. [testng] [2024-10-28 04:19:45,976] [pool-1-thread-3] Initializing /data/xiuwen/head2.seq: [testng] 04:19:45,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:19:45,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:45,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_04-19-45.log] [testng] 04:19:45,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a131ae7 - End of configuration. [testng] [2024-10-28 04:19:46,403] [pool-1-thread-2] Initializing /data/converted/dub01.pic: [testng] 04:19:46,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:19:46,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:46,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_04-19-46.log] [testng] 04:19:46,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ef5a08e - End of configuration. [testng] [2024-10-28 04:19:51,143] [pool-1-thread-1] Initializing /data/converted/dub01.ipw: [testng] [2024-10-28 04:19:51,511] [pool-1-thread-10] Initializing /data/converted/mitosis-test.tif: [testng] [2024-10-28 04:19:52,546] [pool-1-thread-4] Initializing /data/converted/clown.seq: [testng] [2024-10-28 04:19:52,914] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-10-28 04:19:53,832] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF: [testng] [2024-10-28 04:19:54,731] [pool-1-thread-8] Initializing /data/converted/dub01.seq: [testng] [2024-10-28 04:19:55,104] [pool-1-thread-12] Initializing /data/converted/clown8c.seq: [testng] [2024-10-28 04:19:55,508] [pool-1-thread-9] Initializing /data/samples/PROBE.TIF: [testng] [2024-10-28 04:19:56,669] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 22 seconds Finished: SUCCESS