Started by upstream project "BIOFORMATS-test-repo" build number 238
originally caused by:
 Started by upstream project "Trigger" build number 263
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2617724569052656679.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37504_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 03:53:16,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:53:16,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 03:53:16,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:53:16,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:53:16,766 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:53:16,766 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:53:16,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:53:16,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:53:16,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:53:16,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:53:16,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:53:16,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:53:16,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:53:16,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:53:16,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:53:16,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:53:16,955 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:53:16,955 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:53:16,955 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:53:16,956 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:53:16,956 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 03:53:16,956 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 03:53:16,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-29 03:53:16,964] [main] java.version = 11.0.16
   [testng] 03:53:16,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:53:16,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:17,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-29_03-53-16.log]
   [testng] 03:53:17,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-10-29 03:53:17,026] [main] testng.directory = /data
   [testng] [2024-10-29 03:53:17,026] [main] testng.configDirectory = /config
   [testng] [2024-10-29 03:53:17,035] [main] testng.multiplier = 1.0
   [testng] [2024-10-29 03:53:17,036] [main] testng.in-memory = false
   [testng] [2024-10-29 03:53:17,037] [main] testng.allow-missing = false
   [testng] [2024-10-29 03:53:17,037] [main] user.language = en
   [testng] [2024-10-29 03:53:17,037] [main] user.country = ${user.country}
   [testng] [2024-10-29 03:53:17,037] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-29 03:53:33,647] [main] ----------------------------------------
   [testng] [2024-10-29 03:53:33,647] [main] Total files: 31
   [testng] [2024-10-29 03:53:33,647] [main] Scan time: 16.61 s (535 ms/file)
   [testng] [2024-10-29 03:53:33,647] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 30 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-29 03:53:52,108] [pool-1-thread-1] Initializing /data/venu/Multichannel 3a.jpg: 
   [testng] 03:53:52,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:53:52,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:52,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-29_03-53-52.log]
   [testng] 03:53:52,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65b04e56 - End of configuration.
   [testng] [2024-10-29 03:53:52,243] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: 
   [testng] 03:53:52,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:53:52,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:52,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-29_03-53-52.log]
   [testng] 03:53:52,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57308dfc - End of configuration.
   [testng] [2024-10-29 03:53:52,702] [pool-1-thread-11] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: 
   [testng] 03:53:52,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:53:52,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:52,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-29_03-53-52.log]
   [testng] 03:53:52,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60811aae - End of configuration.
   [testng] [2024-10-29 03:53:53,140] [pool-1-thread-10] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: 
   [testng] 03:53:53,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:53:53,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:53,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-29_03-53-53.log]
   [testng] 03:53:53,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aeaf405 - End of configuration.
   [testng] [2024-10-29 03:53:53,659] [pool-1-thread-9] Initializing /data/david/C1R1_FOS.jp2: 
   [testng] 03:53:53,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:53:53,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:53,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-29_03-53-53.log]
   [testng] 03:53:53,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a69c79 - End of configuration.
   [testng] [2024-10-29 03:53:54,086] [pool-1-thread-8] Initializing /data/vikram/Captured 3.jp2: 
   [testng] 03:53:54,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:53:54,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:54,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-29_03-53-54.log]
   [testng] 03:53:54,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38559d0b - End of configuration.
   [testng] [2024-10-29 03:53:54,598] [pool-1-thread-7] Initializing /data/vikram/Captured 2.jp2: 
   [testng] 03:53:54,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:53:54,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:54,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-29_03-53-54.log]
   [testng] 03:53:54,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@311b3050 - End of configuration.
   [testng] [2024-10-29 03:53:54,971] [pool-1-thread-6] Initializing /data/venu/Multichannel 3.jp2: 
   [testng] 03:53:54,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:53:54,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:54,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-29_03-53-54.log]
   [testng] 03:53:54,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f280f9a - End of configuration.
   [testng] [2024-10-29 03:53:55,578] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: 
   [testng] 03:53:55,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:53:55,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:55,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-29_03-53-55.log]
   [testng] 03:53:55,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4036258c - End of configuration.
   [testng] [2024-10-29 03:53:56,228] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jpc: 
   [testng] 03:53:56,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:53:56,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:56,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-29_03-53-56.log]
   [testng] 03:53:56,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f2a3685 - End of configuration.
   [testng] [2024-10-29 03:53:56,871] [pool-1-thread-3] Initializing /data/frans/flower.jp2: 
   [testng] 03:53:56,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:53:56,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:56,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-29_03-53-56.log]
   [testng] 03:53:56,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30202cb1 - End of configuration.
   [testng] [2024-10-29 03:53:57,447] [pool-1-thread-2] Initializing /data/david/000000_000001.jpx: 
   [testng] 03:53:57,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:53:57,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:57,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-29_03-53-57.log]
   [testng] 03:53:57,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a647f16 - End of configuration.
   [testng] [2024-10-29 03:54:02,227] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: 
   [testng] [2024-10-29 03:54:02,804] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: 
   [testng] [2024-10-29 03:54:03,379] [pool-1-thread-8] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: 
   [testng] [2024-10-29 03:54:04,059] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jp2: 
   [testng] [2024-10-29 03:54:07,325] [pool-1-thread-7] Initializing /data/big-images/2kx2k.jpf: 
   [testng] [2024-10-29 03:54:08,687] [pool-1-thread-2] Initializing /data/big-images/4kx4k.jpf: 
   [testng] [2024-10-29 03:54:12,234] [pool-1-thread-1] Initializing /data/david/cy5-tph.jp2: 
   [testng] [2024-10-29 03:54:12,958] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: 
   [testng] [2024-10-29 03:54:14,084] [pool-1-thread-12] Initializing /data/david/multichannel-3d-MBF-type.jpx: 
   [testng] [2024-10-29 03:54:14,807] [pool-1-thread-6] Initializing /data/vikram/Captured 5.jp2: 
   [testng] [2024-10-29 03:54:15,244] [pool-1-thread-5] Initializing /data/vikram/Captured 4.jp2: 
   [testng] [2024-10-29 03:54:17,720] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: 
   [testng] [2024-10-29 03:54:21,394] [pool-1-thread-5] Initializing /data/kraig/head.jp2: 
   [testng] [2024-10-29 03:54:22,018] [pool-1-thread-6] Initializing /data/aryeh/flour 12.jp2: 
   [testng] [2024-10-29 03:54:24,442] [pool-1-thread-7] Initializing /data/big-images/8kx8k.jpf: 
   [testng] [2024-10-29 03:54:25,146] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig: 
   [testng] [2024-10-29 03:54:26,694] [pool-1-thread-9] Initializing /data/vikram/Captured 1.jp2: 
   [testng] [2024-10-29 03:54:27,884] [pool-1-thread-3] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1590, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 6 minutes 20 seconds
Finished: SUCCESS