Started by upstream project "BIOFORMATS-test-repo" build number 239
originally caused by:
Started by upstream project "Trigger" build number 264
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins17839438359179150629.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37528_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:31:29,472 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:31:29,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:31:29,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:31:29,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:31:29,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:31:29,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:31:29,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:31:29,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:31:29,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:31:29,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:31:29,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:31:29,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:31:29,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:31:29,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:31:29,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:31:29,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:31:29,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:31:29,670 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:31:29,670 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:31:29,671 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:31:29,671 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:31:29,671 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:31:29,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-30 00:31:29,680] [main] java.version = 17.0.2
[testng] 00:31:29,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:31:29,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:29,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_00-31-29.log]
[testng] 00:31:29,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-30 00:31:29,726] [main] testng.directory = /data
[testng] [2024-10-30 00:31:29,726] [main] testng.configDirectory = /config
[testng] [2024-10-30 00:31:29,735] [main] testng.multiplier = 1.0
[testng] [2024-10-30 00:31:29,735] [main] testng.in-memory = false
[testng] [2024-10-30 00:31:29,736] [main] testng.allow-missing = false
[testng] [2024-10-30 00:31:29,736] [main] user.language = en
[testng] [2024-10-30 00:31:29,736] [main] user.country = ${user.country}
[testng] [2024-10-30 00:31:29,736] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-30 00:31:33,835] [main] ----------------------------------------
[testng] [2024-10-30 00:31:33,835] [main] Total files: 21
[testng] [2024-10-30 00:31:33,835] [main] Scan time: 4.099 s (195 ms/file)
[testng] [2024-10-30 00:31:33,836] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-30 00:31:45,466] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt:
[testng] 00:31:45,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:31:45,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:45,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_00-31-45.log]
[testng] 00:31:45,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4843aba6 - End of configuration.
[testng] [2024-10-30 00:31:46,039] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt:
[testng] 00:31:46,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:31:46,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:46,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-30_00-31-46.log]
[testng] 00:31:46,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6b72c6 - End of configuration.
[testng] [2024-10-30 00:31:47,134] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt:
[testng] 00:31:47,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:31:47,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:47,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-30_00-31-47.log]
[testng] 00:31:47,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f40fb7 - End of configuration.
[testng] [2024-10-30 00:31:48,438] [pool-1-thread-10] Initializing /data/stefan/001_q01.txt:
[testng] 00:31:48,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:31:48,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:48,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_00-31-48.log]
[testng] 00:31:48,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ef6910 - End of configuration.
[testng] [2024-10-30 00:31:49,100] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt:
[testng] 00:31:49,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:31:49,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:49,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_00-31-49.log]
[testng] 00:31:49,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eba536b - End of configuration.
[testng] [2024-10-30 00:31:49,609] [pool-1-thread-8] Initializing /data/stefan/001_q13.txt:
[testng] 00:31:49,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:31:49,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:49,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_00-31-49.log]
[testng] 00:31:49,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74acbb2d - End of configuration.
[testng] [2024-10-30 00:31:49,986] [pool-1-thread-7] Initializing /data/stefan/001_q09.txt:
[testng] 00:31:49,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:31:49,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:49,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_00-31-49.log]
[testng] 00:31:49,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3db161ea - End of configuration.
[testng] [2024-10-30 00:31:50,597] [pool-1-thread-6] Initializing /data/stefan/001_q06.txt:
[testng] 00:31:50,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:31:50,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:50,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_00-31-50.log]
[testng] 00:31:50,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fb5bf1 - End of configuration.
[testng] [2024-10-30 00:31:51,166] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt:
[testng] 00:31:51,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:31:51,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:51,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_00-31-51.log]
[testng] 00:31:51,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e65ca21 - End of configuration.
[testng] [2024-10-30 00:31:52,131] [pool-1-thread-4] Initializing /data/stefan/001_q17.txt:
[testng] 00:31:52,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:31:52,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:52,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_00-31-52.log]
[testng] 00:31:52,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@268cf3d7 - End of configuration.
[testng] [2024-10-30 00:31:52,738] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt:
[testng] 00:31:52,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:31:52,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:52,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_00-31-52.log]
[testng] 00:31:52,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36b54247 - End of configuration.
[testng] [2024-10-30 00:31:53,454] [pool-1-thread-2] Initializing /data/stefan/001_q11.txt:
[testng] 00:31:53,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:31:53,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:53,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_00-31-53.log]
[testng] 00:31:53,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d025841 - End of configuration.
[testng] [2024-10-30 00:32:07,107] [pool-1-thread-1] Initializing /data/stefan/001_q05.txt:
[testng] [2024-10-30 00:32:08,054] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt:
[testng] [2024-10-30 00:32:08,774] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt:
[testng] [2024-10-30 00:32:09,545] [pool-1-thread-8] Initializing /data/stefan/001_q08.txt:
[testng] [2024-10-30 00:32:12,586] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt:
[testng] [2024-10-30 00:32:15,032] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 10 seconds
Finished: SUCCESS