Started by upstream project "BIOFORMATS-test-repo" build number 29
originally caused by:
Started by upstream project "Trigger" build number 32
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13833792818419214186.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3755_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:20:22,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:20:22,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:20:22,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:22,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:20:22,340 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:20:22,340 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:20:22,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:20:22,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:22,341 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:20:22,341 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:20:22,342 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:20:22,342 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:20:22,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:20:22,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:20:22,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:20:22,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:20:22,578 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:20:22,579 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:20:22,579 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:20:22,579 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:20:22,579 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:20:22,580 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:20:22,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 239 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-10 01:20:22,589] [main] java.version = 17.0.2
[testng] 01:20:22,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:20:22,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:20:22,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-10_01-20-22.log]
[testng] 01:20:22,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-10 01:20:22,643] [main] testng.directory = /data
[testng] [2024-04-10 01:20:22,644] [main] testng.configDirectory = /config
[testng] [2024-04-10 01:20:22,653] [main] testng.multiplier = 1.0
[testng] [2024-04-10 01:20:22,654] [main] testng.in-memory = false
[testng] [2024-04-10 01:20:22,654] [main] testng.allow-missing = false
[testng] [2024-04-10 01:20:22,654] [main] user.language = en
[testng] [2024-04-10 01:20:22,654] [main] user.country = ${user.country}
[testng] [2024-04-10 01:20:22,654] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-10 01:20:39,699] [main] ----------------------------------------
[testng] [2024-04-10 01:20:39,699] [main] Total files: 283
[testng] [2024-04-10 01:20:39,699] [main] Scan time: 17.045 s (60 ms/file)
[testng] [2024-04-10 01:20:39,699] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-10 01:28:44,466] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] 01:28:44,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:28:44,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-10_01-28-44.log]
[testng] 01:28:44,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e1d95c4 - End of configuration.
[testng] [2024-04-10 01:28:44,510] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] 01:28:44,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:28:44,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-10_01-28-44.log]
[testng] 01:28:44,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cff0c00 - End of configuration.
[testng] [2024-04-10 01:28:44,614] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 01:28:44,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:28:44,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-10_01-28-44.log]
[testng] 01:28:44,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f6325d - End of configuration.
[testng] [2024-04-10 01:28:44,677] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] 01:28:44,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:28:44,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-10_01-28-44.log]
[testng] 01:28:44,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2cd835 - End of configuration.
[testng] [2024-04-10 01:28:44,772] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] 01:28:44,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:28:44,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-10_01-28-44.log]
[testng] 01:28:44,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50ecfb31 - End of configuration.
[testng] [2024-04-10 01:28:44,854] [pool-1-thread-8] Initializing /data/qa-17270/image1.oir:
[testng] 01:28:44,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:28:44,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-10_01-28-44.log]
[testng] 01:28:44,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ed48ef - End of configuration.
[testng] [2024-04-10 01:28:44,915] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir:
[testng] 01:28:44,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:28:44,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:44,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-10_01-28-44.log]
[testng] 01:28:44,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@759d77a5 - End of configuration.
[testng] [2024-04-10 01:29:01,013] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] 01:29:01,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:29:01,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:01,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-10_01-29-01.log]
[testng] 01:29:01,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b32ab7f - End of configuration.
[testng] [2024-04-10 01:29:01,054] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 01:29:01,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:29:01,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:01,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-10_01-29-01.log]
[testng] 01:29:01,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c7ba8e - End of configuration.
[testng] [2024-04-10 01:29:01,079] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] 01:29:01,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:29:01,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:01,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-10_01-29-01.log]
[testng] 01:29:01,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a85469f - End of configuration.
[testng] [2024-04-10 01:29:01,189] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 01:29:01,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:29:01,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:01,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-10_01-29-01.log]
[testng] 01:29:01,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f3915d9 - End of configuration.
[testng] [2024-04-10 01:29:01,232] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] 01:29:01,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:29:01,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:29:01,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-10_01-29-01.log]
[testng] 01:29:01,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfc5d75 - End of configuration.
[testng] [2024-04-10 01:29:04,034] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-04-10 01:29:04,291] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-04-10 01:29:05,881] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-04-10 01:29:06,159] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-04-10 01:29:06,598] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-04-10 01:29:06,679] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-04-10 01:29:06,728] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-04-10 01:29:06,754] [pool-1-thread-10] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-04-10 01:29:06,891] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-04-10 01:29:07,243] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-04-10 01:29:07,389] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-04-10 01:29:09,204] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-04-10 01:29:09,394] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-04-10 01:29:09,618] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-04-10 01:29:09,800] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-04-10 01:29:10,334] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-04-10 01:29:10,571] [pool-1-thread-11] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-04-10 01:29:56,412] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-04-10 01:29:56,571] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-04-10 01:29:56,948] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-04-10 01:29:57,336] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-04-10 01:29:57,632] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-04-10 01:29:57,940] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-04-10 01:29:58,092] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-04-10 01:29:58,149] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-04-10 01:29:58,199] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-04-10 01:29:58,497] [pool-1-thread-1] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-04-10 01:30:02,833] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-04-10 01:30:03,318] [pool-1-thread-2] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-04-10 01:30:03,497] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-04-10 01:30:03,824] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-04-10 01:30:04,190] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-04-10 01:30:04,345] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-04-10 01:30:05,335] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-04-10 01:30:05,946] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-04-10 01:30:06,002] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-04-10 01:30:06,156] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-04-10 01:30:06,546] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-04-10 01:30:06,914] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-04-10 01:30:07,107] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-04-10 01:30:07,548] [pool-1-thread-6] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-04-10 01:30:07,809] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-04-10 01:30:08,078] [pool-1-thread-9] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-04-10 01:30:08,169] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-04-10 01:30:08,339] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-04-10 01:30:09,213] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-04-10 01:30:09,274] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-04-10 01:30:09,350] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-04-10 01:30:09,498] [pool-1-thread-9] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-04-10 01:30:09,608] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-04-10 01:30:09,716] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-04-10 01:30:10,437] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-04-10 01:30:10,647] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-04-10 01:30:10,919] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-04-10 01:30:11,004] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-04-10 01:30:11,253] [pool-1-thread-10] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-04-10 01:30:36,416] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-04-10 01:30:36,483] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-04-10 01:30:36,945] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-04-10 01:30:37,487] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-04-10 01:30:37,908] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-04-10 01:30:39,129] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-04-10 01:30:39,273] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-04-10 01:30:39,400] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-04-10 01:30:39,447] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-04-10 01:30:39,594] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-04-10 01:30:39,807] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-04-10 01:30:40,817] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-04-10 01:30:40,982] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-04-10 01:30:41,069] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-04-10 01:30:41,193] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-04-10 01:30:41,660] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-04-10 01:30:41,847] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-04-10 01:30:41,916] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-04-10 01:30:42,985] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-04-10 01:30:43,382] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-04-10 01:30:43,593] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-04-10 01:30:43,647] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-04-10 01:30:43,770] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-04-10 01:30:44,114] [pool-1-thread-12] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-04-10 01:30:44,815] [pool-1-thread-9] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-04-10 01:30:44,869] [pool-1-thread-8] Initializing /data/qa-17335/1.oir:
[testng] [2024-04-10 01:30:45,020] [pool-1-thread-3] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-04-10 01:30:45,213] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-04-10 01:30:45,681] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-04-10 01:30:46,048] [pool-1-thread-8] Initializing /data/olympus/XYZt.oir:
[testng] [2024-04-10 01:30:47,773] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-04-10 01:30:48,024] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-04-10 01:30:48,264] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-04-10 01:30:49,114] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-04-10 01:30:49,357] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-04-10 01:30:49,594] [pool-1-thread-9] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-04-10 01:31:09,357] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-04-10 01:31:13,013] [pool-1-thread-3] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-04-10 01:31:13,465] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-04-10 01:31:13,988] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-04-10 01:31:14,083] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-04-10 01:31:14,373] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-04-10 01:31:14,880] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-04-10 01:31:15,033] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-04-10 01:31:15,424] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-04-10 01:31:15,504] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-04-10 01:31:16,371] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-04-10 01:31:16,873] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-04-10 01:31:16,953] [pool-1-thread-6] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-04-10 01:31:17,194] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-04-10 01:31:17,668] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-04-10 01:31:18,047] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-04-10 01:31:18,504] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-04-10 01:31:19,089] [pool-1-thread-8] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-04-10 01:31:19,360] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-04-10 01:31:19,579] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-04-10 01:31:19,917] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-04-10 01:31:20,691] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-04-10 01:31:21,043] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-04-10 01:31:21,223] [pool-1-thread-1] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-04-10 01:31:21,789] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-04-10 01:31:22,165] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-04-10 01:31:22,652] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-04-10 01:31:22,764] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-04-10 01:31:22,832] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-04-10 01:31:22,960] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-04-10 01:31:23,164] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-04-10 01:31:23,535] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-04-10 01:31:23,848] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-04-10 01:31:24,107] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-04-10 01:31:24,191] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-04-10 01:31:24,452] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-04-10 01:31:24,633] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-04-10 01:31:25,111] [pool-1-thread-4] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-04-10 01:31:25,477] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-04-10 01:31:28,062] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-04-10 01:31:28,267] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-04-10 01:31:28,388] [pool-1-thread-2] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-04-10 01:31:28,999] [pool-1-thread-12] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-04-10 01:31:29,196] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-04-10 01:31:29,678] [pool-1-thread-8] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-04-10 01:31:29,810] [pool-1-thread-1] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-04-10 01:31:30,353] [pool-1-thread-2] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-04-10 01:31:31,504] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-04-10 01:31:31,621] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-04-10 01:31:32,023] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-04-10 01:31:32,691] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-04-10 01:31:37,112] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-04-10 01:31:37,223] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-04-10 01:31:38,062] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-04-10 01:31:38,315] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-04-10 01:31:38,494] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-04-10 01:31:38,837] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-04-10 01:31:39,685] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-04-10 01:31:39,842] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-04-10 01:31:40,119] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-04-10 01:31:41,587] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-04-10 01:31:41,814] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-04-10 01:31:41,863] [pool-1-thread-1] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-04-10 01:31:41,992] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-04-10 01:31:44,634] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-04-10 01:31:44,738] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-04-10 01:31:44,863] [pool-1-thread-8] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-04-10 01:31:46,065] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-04-10 01:31:46,188] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-04-10 01:31:48,791] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-04-10 01:31:50,596] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-04-10 01:31:50,867] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-04-10 01:31:51,605] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-04-10 01:31:52,727] [pool-1-thread-1] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-04-10 01:31:52,855] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-04-10 01:31:53,135] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-04-10 01:31:54,626] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-04-10 01:31:54,920] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-04-10 01:31:55,829] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-04-10 01:31:56,179] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-04-10 01:31:57,208] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-04-10 01:31:57,894] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 40 minutes 33 seconds
Finished: SUCCESS