Started by upstream project "BIOFORMATS-test-repo" build number 239
originally caused by:
 Started by upstream project "Trigger" build number 264
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins467669215255068664.sh
+ '[' metaxpress = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37552_merge_ci -v /uod/idr/repos/curated/metaxpress:/data -v /uod/idr-scratch/merge-ci/curated/metaxpress:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 00:48:34,011 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:48:34,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 00:48:34,012 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:48:34,013 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:48:34,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:48:34,014 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:48:34,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:48:34,014 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:48:34,015 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:48:34,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:48:34,015 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:48:34,016 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:48:34,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:48:34,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:48:34,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:48:34,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:48:34,236 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:48:34,236 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:48:34,236 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:48:34,236 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:48:34,237 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 00:48:34,237 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 00:48:34,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 222 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-30 00:48:34,246] [main] java.version = 17.0.2
   [testng] 00:48:34,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:48:34,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:48:34,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_00-48-34.log]
   [testng] 00:48:34,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-30 00:48:34,292] [main] testng.directory = /data
   [testng] [2024-10-30 00:48:34,292] [main] testng.configDirectory = /config
   [testng] [2024-10-30 00:48:34,301] [main] testng.multiplier = 1.0
   [testng] [2024-10-30 00:48:34,302] [main] testng.in-memory = false
   [testng] [2024-10-30 00:48:34,302] [main] testng.allow-missing = false
   [testng] [2024-10-30 00:48:34,302] [main] user.language = en
   [testng] [2024-10-30 00:48:34,302] [main] user.country = ${user.country}
   [testng] [2024-10-30 00:48:34,302] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-30 01:11:14,116] [main] ----------------------------------------
   [testng] [2024-10-30 01:11:14,116] [main] Total files: 1231
   [testng] [2024-10-30 01:11:14,116] [main] Scan time: 1359.814 s (1104 ms/file)
   [testng] [2024-10-30 01:11:14,117] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 10 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-30 01:18:44,808] [pool-1-thread-1] Initializing /data/public/idr0006/plate 11001_Plate_136/TimePoint_1/plate 11001.HTD: 
   [testng] 01:18:44,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:18:44,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:44,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_01-18-44.log]
   [testng] 01:18:44,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13a6a17d - End of configuration.
   [testng] [2024-10-30 01:19:57,011] [pool-1-thread-10] Initializing /data/public/idr0081/BSF018292-1A/BSF018292-1A.HTD: 
   [testng] 01:19:57,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:19:57,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:19:57,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_01-19-57.log]
   [testng] 01:19:57,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2204f99b - End of configuration.
   [testng] [2024-10-30 01:20:13,112] [pool-1-thread-9] Initializing /data/samples/multi-channel-missing-corner/multi-channel.HTD: 
   [testng] 01:20:13,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:20:13,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:13,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_01-20-13.log]
   [testng] 01:20:13,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10c81c61 - End of configuration.
   [testng] [2024-10-30 01:20:14,141] [pool-1-thread-8] Initializing /data/public/idr0005/Primary_001/2011-04-19-plate-1.HTD: 
   [testng] 01:20:14,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:20:14,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:14,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_01-20-14.log]
   [testng] 01:20:14,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a1279e - End of configuration.
   [testng] [2024-10-30 01:20:27,791] [pool-1-thread-7] Initializing /data/samples/multi-z/2011-04-19-plate-1.HTD: 
   [testng] 01:20:27,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:20:27,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:27,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_01-20-27.log]
   [testng] 01:20:27,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e228a7 - End of configuration.
   [testng] [2024-10-30 01:20:41,654] [pool-1-thread-6] Initializing /data/public/idr0008/Plate10_Actinome1/Act1_Plate10-SP-A8.HTD: 
   [testng] 01:20:41,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:20:41,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:41,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_01-20-41.log]
   [testng] 01:20:41,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@463b9003 - End of configuration.
   [testng] [2024-10-30 01:21:52,883] [pool-1-thread-5] Initializing /data/samples/thumb-test/2011-04-19-plate-1.HTD: 
   [testng] 01:21:52,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:21:52,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:21:52,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_01-21-52.log]
   [testng] 01:21:52,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4629037e - End of configuration.
   [testng] [2024-10-30 01:22:19,793] [pool-1-thread-4] Initializing /data/samples/multi-channel-test/multi-channel.HTD: 
   [testng] 01:22:19,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:22:19,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:22:19,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_01-22-19.log]
   [testng] 01:22:19,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b0ff81 - End of configuration.
   [testng] [2024-10-30 01:22:21,283] [pool-1-thread-3] Initializing /data/qa-4207/NSC.HTD: 
   [testng] 01:22:21,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:22:21,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:22:21,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_01-22-21.log]
   [testng] 01:22:21,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3179608f - End of configuration.
   [testng] [2024-10-30 01:22:23,042] [pool-1-thread-2] Initializing /data/samples/single-site-test/single-site.HTD: 
   [testng] 01:22:23,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:22:23,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:22:23,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_01-22-23.log]
   [testng] 01:22:23,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5e429c - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 530, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 63 minutes 2 seconds
Finished: SUCCESS