Started by upstream project "BIOFORMATS-test-repo" build number 239
originally caused by:
Started by upstream project "Trigger" build number 264
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5498162175485319358.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37555_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:52:08,281 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:52:08,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:52:08,282 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:52:08,283 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:52:08,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:52:08,284 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:52:08,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:52:08,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:52:08,284 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:52:08,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:52:08,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:52:08,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:52:08,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:52:08,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:52:08,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:52:08,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:52:08,465 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:52:08,465 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:52:08,465 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:52:08,465 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:52:08,466 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:52:08,467 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:52:08,467 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-10-30 00:52:08,475] [main] java.version = 17.0.2
[testng] 00:52:08,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:52:08,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:08,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_00-52-08.log]
[testng] 00:52:08,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-10-30 00:52:08,519] [main] testng.directory = /data
[testng] [2024-10-30 00:52:08,519] [main] testng.configDirectory = /config
[testng] [2024-10-30 00:52:08,527] [main] testng.multiplier = 1.0
[testng] [2024-10-30 00:52:08,528] [main] testng.in-memory = false
[testng] [2024-10-30 00:52:08,528] [main] testng.allow-missing = false
[testng] [2024-10-30 00:52:08,528] [main] user.language = en
[testng] [2024-10-30 00:52:08,528] [main] user.country = ${user.country}
[testng] [2024-10-30 00:52:08,528] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-10-30 00:52:45,581] [main] ----------------------------------------
[testng] [2024-10-30 00:52:45,581] [main] Total files: 14
[testng] [2024-10-30 00:52:45,581] [main] Scan time: 37.053 s (2646 ms/file)
[testng] [2024-10-30 00:52:45,581] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-10-30 00:52:59,043] [pool-1-thread-1] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:52:59,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:52:59,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:52:59,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_00-52-59.log]
[testng] 00:52:59,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@154e96c0 - End of configuration.
[testng] [2024-10-30 00:53:01,345] [pool-1-thread-12] Initializing /data/samples/BigTIFFLong.tif:
[testng] 00:53:01,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:53:01,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:01,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-30_00-53-01.log]
[testng] 00:53:01,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22889f9a - End of configuration.
[testng] [2024-10-30 00:53:01,706] [pool-1-thread-11] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:53:01,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:53:01,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:01,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-30_00-53-01.log]
[testng] 00:53:01,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21fc73f5 - End of configuration.
[testng] [2024-10-30 00:53:01,949] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:53:01,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:53:01,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:01,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_00-53-01.log]
[testng] 00:53:01,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ef89e71 - End of configuration.
[testng] [2024-10-30 00:53:02,151] [pool-1-thread-9] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:53:02,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:53:02,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:02,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_00-53-02.log]
[testng] 00:53:02,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4603a93f - End of configuration.
[testng] [2024-10-30 00:53:02,282] [pool-1-thread-8] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 00:53:02,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:53:02,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:02,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_00-53-02.log]
[testng] 00:53:02,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eaa24bd - End of configuration.
[testng] [2024-10-30 00:53:02,461] [pool-1-thread-7] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:53:02,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:53:02,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:02,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_00-53-02.log]
[testng] 00:53:02,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cbcdeb0 - End of configuration.
[testng] [2024-10-30 00:53:02,630] [pool-1-thread-6] Initializing /data/samples/BigTIFF.tif:
[testng] 00:53:02,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:53:02,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:02,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_00-53-02.log]
[testng] 00:53:02,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c92a37 - End of configuration.
[testng] [2024-10-30 00:53:02,992] [pool-1-thread-5] Initializing /data/samples/Classic.tif:
[testng] 00:53:02,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:53:02,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:02,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_00-53-02.log]
[testng] 00:53:02,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bb23c7b - End of configuration.
[testng] [2024-10-30 00:53:03,382] [pool-1-thread-4] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 00:53:03,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:53:03,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:03,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_00-53-03.log]
[testng] 00:53:03,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339b87b1 - End of configuration.
[testng] [2024-10-30 00:53:03,806] [pool-1-thread-3] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:53:03,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:53:03,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:03,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_00-53-03.log]
[testng] 00:53:03,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4419bd - End of configuration.
[testng] [2024-10-30 00:53:04,341] [pool-1-thread-2] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:53:04,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:53:04,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:04,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_00-53-04.log]
[testng] 00:53:04,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b2c04b3 - End of configuration.
[testng] [2024-10-30 00:53:09,747] [pool-1-thread-12] Initializing /data/samples/BigTIFFMotorola.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 18 seconds
Finished: SUCCESS