Started by upstream project "BIOFORMATS-test-repo" build number 239 originally caused by: Started by upstream project "Trigger" build number 264 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4614431568312785097.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37668_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:06:26,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:06:26,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:06:26,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:26,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:26,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:06:26,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:06:26,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:06:26,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:26,206 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:26,207 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:06:26,207 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:06:26,207 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:06:26,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:06:26,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:06:26,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:06:26,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:06:26,379 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:06:26,380 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:06:26,380 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:06:26,380 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:06:26,380 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:06:26,381 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:06:26,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 175 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-30 04:06:26,389] [main] java.version = 17.0.2 [testng] 04:06:26,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:06:26,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:26,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_04-06-26.log] [testng] 04:06:26,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-30 04:06:26,433] [main] testng.directory = /data [testng] [2024-10-30 04:06:26,433] [main] testng.configDirectory = /config [testng] [2024-10-30 04:06:26,441] [main] testng.multiplier = 1.0 [testng] [2024-10-30 04:06:26,441] [main] testng.in-memory = false [testng] [2024-10-30 04:06:26,442] [main] testng.allow-missing = false [testng] [2024-10-30 04:06:26,442] [main] user.language = en [testng] [2024-10-30 04:06:26,442] [main] user.country = ${user.country} [testng] [2024-10-30 04:06:26,442] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-30 04:06:49,174] [main] ---------------------------------------- [testng] [2024-10-30 04:06:49,174] [main] Total files: 31 [testng] [2024-10-30 04:06:49,175] [main] Scan time: 22.732 s (733 ms/file) [testng] [2024-10-30 04:06:49,175] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-30 04:07:16,228] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] 04:07:16,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:07:16,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:16,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_04-07-16.log] [testng] 04:07:16,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e7466de - End of configuration. [testng] [2024-10-30 04:07:17,773] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] 04:07:17,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:07:17,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:17,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-30_04-07-17.log] [testng] 04:07:17,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5979bed3 - End of configuration. [testng] [2024-10-30 04:07:18,376] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 04:07:18,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:07:18,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:18,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-30_04-07-18.log] [testng] 04:07:18,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65d80bf - End of configuration. [testng] [2024-10-30 04:07:19,160] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 04:07:19,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:07:19,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:19,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_04-07-19.log] [testng] 04:07:19,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cfc1b2 - End of configuration. [testng] [2024-10-30 04:07:19,759] [pool-1-thread-9] Initializing /data/vikram/Captured 3.jp2: [testng] 04:07:19,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:07:19,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:19,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_04-07-19.log] [testng] 04:07:19,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@278ea1e6 - End of configuration. [testng] [2024-10-30 04:07:20,396] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 04:07:20,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:07:20,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:20,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_04-07-20.log] [testng] 04:07:20,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54b6a6a0 - End of configuration. [testng] [2024-10-30 04:07:20,965] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: [testng] 04:07:20,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:07:20,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:20,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_04-07-20.log] [testng] 04:07:20,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31cee426 - End of configuration. [testng] [2024-10-30 04:07:21,560] [pool-1-thread-6] Initializing /data/big-images/2kx2k.jpf: [testng] 04:07:21,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:07:21,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:21,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_04-07-21.log] [testng] 04:07:21,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@582e7b1e - End of configuration. [testng] [2024-10-30 04:07:22,293] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] 04:07:22,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:07:22,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:22,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_04-07-22.log] [testng] 04:07:22,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2704605 - End of configuration. [testng] [2024-10-30 04:07:23,368] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 04:07:23,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:07:23,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:23,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_04-07-23.log] [testng] 04:07:23,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ade598c - End of configuration. [testng] [2024-10-30 04:07:24,846] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 04:07:24,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:07:24,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:24,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_04-07-24.log] [testng] 04:07:24,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55de1ef8 - End of configuration. [testng] [2024-10-30 04:07:25,637] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 04:07:25,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:07:25,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:25,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_04-07-25.log] [testng] 04:07:25,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a0155d7 - End of configuration. [testng] [2024-10-30 04:07:31,153] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-10-30 04:07:31,939] [pool-1-thread-9] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-10-30 04:07:34,706] [pool-1-thread-1] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-10-30 04:07:35,690] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-10-30 04:07:36,304] [pool-1-thread-10] Initializing /data/kraig/head.jp2: [testng] [2024-10-30 04:07:37,208] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-10-30 04:07:40,575] [pool-1-thread-12] Initializing /data/frans/flower.jp2: [testng] [2024-10-30 04:07:41,990] [pool-1-thread-6] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-10-30 04:07:44,537] [pool-1-thread-2] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-10-30 04:07:45,393] [pool-1-thread-11] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-10-30 04:07:45,580] [pool-1-thread-5] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-10-30 04:07:46,318] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-10-30 04:07:47,348] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx: [testng] [2024-10-30 04:07:48,366] [pool-1-thread-3] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-10-30 04:07:51,752] [pool-1-thread-6] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-10-30 04:07:55,239] [pool-1-thread-11] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-10-30 04:07:56,378] [pool-1-thread-5] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-10-30 04:08:00,168] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jpc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 2 seconds Finished: SUCCESS