Started by upstream project "BIOFORMATS-test-repo" build number 29
originally caused by:
Started by upstream project "Trigger" build number 32
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1660751463203856130.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3772_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:23:07,442 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:23:07,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:23:07,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:07,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:23:07,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:23:07,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:23:07,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:23:07,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:07,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:23:07,446 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:23:07,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:23:07,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:23:07,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:23:07,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:23:07,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:23:07,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:23:07,649 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:23:07,650 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:23:07,650 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:23:07,650 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:23:07,650 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:23:07,651 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:23:07,651 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-10 01:23:07,663] [main] java.version = 17.0.2
[testng] 01:23:07,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:23:07,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:07,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-10_01-23-07.log]
[testng] 01:23:07,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-10 01:23:07,729] [main] testng.directory = /data
[testng] [2024-04-10 01:23:07,729] [main] testng.configDirectory = /config
[testng] [2024-04-10 01:23:07,738] [main] testng.multiplier = 1.0
[testng] [2024-04-10 01:23:07,739] [main] testng.in-memory = false
[testng] [2024-04-10 01:23:07,739] [main] testng.allow-missing = false
[testng] [2024-04-10 01:23:07,739] [main] user.language = en
[testng] [2024-04-10 01:23:07,739] [main] user.country = ${user.country}
[testng] [2024-04-10 01:23:07,739] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-10 01:23:08,902] [main] ----------------------------------------
[testng] [2024-04-10 01:23:08,902] [main] Total files: 21
[testng] [2024-04-10 01:23:08,903] [main] Scan time: 1.163 s (55 ms/file)
[testng] [2024-04-10 01:23:08,903] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-10 01:23:10,697] [pool-1-thread-1] Initializing /data/steffen/Batman_008.tif:
[testng] 01:23:10,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:23:10,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-10_01-23-10.log]
[testng] 01:23:10,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3818d204 - End of configuration.
[testng] [2024-04-10 01:23:10,737] [pool-1-thread-12] Initializing /data/venu/VENU03.IMG:
[testng] 01:23:10,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:23:10,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-10_01-23-10.log]
[testng] 01:23:10,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@643b483e - End of configuration.
[testng] [2024-04-10 01:23:10,759] [pool-1-thread-11] Initializing /data/venu/VENU_Six.TIF:
[testng] 01:23:10,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:23:10,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-10_01-23-10.log]
[testng] 01:23:10,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fea4185 - End of configuration.
[testng] [2024-04-10 01:23:10,792] [pool-1-thread-10] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 01:23:10,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:23:10,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-10_01-23-10.log]
[testng] 01:23:10,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b3ae7e0 - End of configuration.
[testng] [2024-04-10 01:23:10,851] [pool-1-thread-9] Initializing /data/venu/VENU_Seven.TIF:
[testng] 01:23:10,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:23:10,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-10_01-23-10.log]
[testng] 01:23:10,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c7287c7 - End of configuration.
[testng] [2024-04-10 01:23:10,887] [pool-1-thread-8] Initializing /data/venu/VENU_Eight.TIF:
[testng] 01:23:10,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:23:10,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-10_01-23-10.log]
[testng] 01:23:10,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16b811b8 - End of configuration.
[testng] [2024-04-10 01:23:10,919] [pool-1-thread-7] Initializing /data/venu/VENU02.IMG:
[testng] 01:23:10,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:23:10,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-10_01-23-10.log]
[testng] 01:23:10,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1082d50b - End of configuration.
[testng] [2024-04-10 01:23:10,938] [pool-1-thread-6] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 01:23:10,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:23:10,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-10_01-23-10.log]
[testng] 01:23:10,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ded86d - End of configuration.
[testng] [2024-04-10 01:23:10,990] [pool-1-thread-5] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 01:23:10,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:23:10,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:10,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-10_01-23-10.log]
[testng] 01:23:10,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11db8d50 - End of configuration.
[testng] [2024-04-10 01:23:11,044] [pool-1-thread-4] Initializing /data/venu/VENU_Five.TIF:
[testng] 01:23:11,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:23:11,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:11,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-10_01-23-11.log]
[testng] 01:23:11,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16899f89 - End of configuration.
[testng] [2024-04-10 01:23:11,077] [pool-1-thread-3] Initializing /data/venu/VENU02.TIF:
[testng] 01:23:11,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:23:11,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:11,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-10_01-23-11.log]
[testng] 01:23:11,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650cdef5 - End of configuration.
[testng] [2024-04-10 01:23:11,123] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] 01:23:11,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:23:11,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:11,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-10_01-23-11.log]
[testng] 01:23:11,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b3c6ea5 - End of configuration.
[testng] [2024-04-10 01:23:13,420] [pool-1-thread-12] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] [2024-04-10 01:23:13,475] [pool-1-thread-9] Initializing /data/venu/VENU.TIF:
[testng] [2024-04-10 01:23:13,504] [pool-1-thread-1] Initializing /data/venu/VENU03.TIF:
[testng] [2024-04-10 01:23:13,565] [pool-1-thread-11] Initializing /data/venu/VENU01.TIF:
[testng] [2024-04-10 01:23:13,621] [pool-1-thread-6] Initializing /data/venu/VENU_Four.TIF:
[testng] [2024-04-10 01:23:13,658] [pool-1-thread-3] Initializing /data/venu/VENU01.IMG:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS