Started by upstream project "BIOFORMATS-test-repo" build number 241
originally caused by:
Started by upstream project "Trigger" build number 266
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins607392670300846518.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37907_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:28:26,615 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:28:26,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 01:28:26,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:26,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:28:26,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:28:26,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:28:26,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:28:26,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:26,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:28:26,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:28:26,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:28:26,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:28:26,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:28:26,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:28:26,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:28:26,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:28:26,902 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:28:26,902 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:28:26,902 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:28:26,903 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:28:26,903 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 01:28:26,904 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 01:28:26,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-01 01:28:26,914] [main] java.version = 1.8.0_342
[testng] 01:28:26,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:28:26,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:26,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-01_01-28-26.log]
[testng] 01:28:26,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-01 01:28:26,982] [main] testng.directory = /data
[testng] [2024-11-01 01:28:26,982] [main] testng.configDirectory = /config
[testng] [2024-11-01 01:28:26,994] [main] testng.multiplier = 1.0
[testng] [2024-11-01 01:28:26,994] [main] testng.in-memory = false
[testng] [2024-11-01 01:28:26,994] [main] testng.allow-missing = false
[testng] [2024-11-01 01:28:26,994] [main] user.language = en
[testng] [2024-11-01 01:28:26,994] [main] user.country = ${user.country}
[testng] [2024-11-01 01:28:26,995] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-01 01:28:37,916] [main] ----------------------------------------
[testng] [2024-11-01 01:28:37,916] [main] Total files: 25
[testng] [2024-11-01 01:28:37,916] [main] Scan time: 10.921 s (436 ms/file)
[testng] [2024-11-01 01:28:37,916] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-01 01:28:51,536] [pool-1-thread-1] Initializing /data/imagic/1-1.dm2:
[testng] 01:28:51,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:28:51,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:51,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-01_01-28-51.log]
[testng] 01:28:51,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6515b89e - End of configuration.
[testng] [2024-11-01 01:28:51,782] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 01:28:51,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:28:51,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:51,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-01_01-28-51.log]
[testng] 01:28:51,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e401f - End of configuration.
[testng] [2024-11-01 01:28:51,829] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 01:28:51,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:28:51,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:51,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-01_01-28-51.log]
[testng] 01:28:51,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8b99b6 - End of configuration.
[testng] [2024-11-01 01:28:52,020] [pool-1-thread-10] Initializing /data/imagic/TEM 10118.dm2:
[testng] 01:28:52,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:28:52,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:52,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-01_01-28-52.log]
[testng] 01:28:52,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6528f1b5 - End of configuration.
[testng] [2024-11-01 01:28:52,210] [pool-1-thread-9] Initializing /data/pang/unproc-auto:
[testng] 01:28:52,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:28:52,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:52,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-01_01-28-52.log]
[testng] 01:28:52,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29deaaa0 - End of configuration.
[testng] [2024-11-01 01:28:52,429] [pool-1-thread-8] Initializing /data/pang/grating025k.dm2:
[testng] 01:28:52,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:28:52,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:52,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-01_01-28-52.log]
[testng] 01:28:52,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6578be10 - End of configuration.
[testng] [2024-11-01 01:28:52,600] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] 01:28:52,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:28:52,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:52,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-01_01-28-52.log]
[testng] 01:28:52,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c9677ad - End of configuration.
[testng] [2024-11-01 01:28:52,635] [pool-1-thread-6] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] 01:28:52,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:28:52,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:52,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-01_01-28-52.log]
[testng] 01:28:52,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb61b2c - End of configuration.
[testng] [2024-11-01 01:28:52,808] [pool-1-thread-5] Initializing /data/pang/10500x-o4:
[testng] 01:28:52,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:28:52,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:52,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-01_01-28-52.log]
[testng] 01:28:52,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76839666 - End of configuration.
[testng] [2024-11-01 01:28:53,002] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] 01:28:53,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:28:53,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:53,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-01_01-28-53.log]
[testng] 01:28:53,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5462f2c4 - End of configuration.
[testng] [2024-11-01 01:28:53,030] [pool-1-thread-3] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 01:28:53,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:28:53,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:53,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-01_01-28-53.log]
[testng] 01:28:53,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bab1efc - End of configuration.
[testng] [2024-11-01 01:28:53,056] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 01:28:53,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:28:53,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:28:53,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-01_01-28-53.log]
[testng] 01:28:53,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@666731ab - End of configuration.
[testng] [2024-11-01 01:28:55,649] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] [2024-11-01 01:28:55,803] [pool-1-thread-7] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] [2024-11-01 01:28:55,827] [pool-1-thread-4] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] [2024-11-01 01:28:55,983] [pool-1-thread-12] Initializing /data/imagic/13008.dm2:
[testng] [2024-11-01 01:28:56,146] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] [2024-11-01 01:28:56,221] [pool-1-thread-11] Initializing /data/pang/signed:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 34 seconds
Finished: SUCCESS