Started by upstream project "BIOFORMATS-test-repo" build number 241
originally caused by:
Started by upstream project "Trigger" build number 266
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17838838900866577879.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37995_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 04:11:31,768 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:11:31,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 04:11:31,769 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:11:31,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:11:31,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:11:31,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:11:31,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:11:31,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:11:31,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:11:31,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:11:31,772 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:11:31,772 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:11:31,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:11:31,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:11:32,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:11:32,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:11:32,015 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:11:32,016 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:11:32,016 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:11:32,016 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:11:32,016 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 04:11:32,017 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 04:11:32,017 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 246 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-01 04:11:32,026] [main] java.version = 1.8.0_342
[testng] 04:11:32,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:11:32,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:32,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-01_04-11-32.log]
[testng] 04:11:32,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-01 04:11:32,075] [main] testng.directory = /data
[testng] [2024-11-01 04:11:32,075] [main] testng.configDirectory = /config
[testng] [2024-11-01 04:11:32,087] [main] testng.multiplier = 1.0
[testng] [2024-11-01 04:11:32,087] [main] testng.in-memory = false
[testng] [2024-11-01 04:11:32,087] [main] testng.allow-missing = false
[testng] [2024-11-01 04:11:32,087] [main] user.language = en
[testng] [2024-11-01 04:11:32,087] [main] user.country = ${user.country}
[testng] [2024-11-01 04:11:32,087] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-01 04:11:34,497] [main] ----------------------------------------
[testng] [2024-11-01 04:11:34,497] [main] Total files: 17
[testng] [2024-11-01 04:11:34,497] [main] Scan time: 2.41 s (141 ms/file)
[testng] [2024-11-01 04:11:34,497] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 17 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-01 04:11:37,506] [pool-1-thread-1] Initializing /data/christopher/Color48 Copy.ipm:
[testng] 04:11:37,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:11:37,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:37,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-01_04-11-37.log]
[testng] 04:11:37,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22d817db - End of configuration.
[testng] [2024-11-01 04:11:37,616] [pool-1-thread-12] Initializing /data/samples/16bit 320x256x1.ipm:
[testng] 04:11:37,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:11:37,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:37,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-01_04-11-37.log]
[testng] 04:11:37,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ce01d4 - End of configuration.
[testng] [2024-11-01 04:11:37,725] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm:
[testng] 04:11:37,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:11:37,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:37,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-01_04-11-37.log]
[testng] 04:11:37,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25e7fb75 - End of configuration.
[testng] [2024-11-01 04:11:37,843] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center:
[testng] 04:11:37,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:11:37,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:37,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-01_04-11-37.log]
[testng] 04:11:37,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ff8b03 - End of configuration.
[testng] [2024-11-01 04:11:37,937] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm:
[testng] 04:11:37,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:11:37,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:37,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-01_04-11-37.log]
[testng] 04:11:37,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28379f6f - End of configuration.
[testng] [2024-11-01 04:11:38,028] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm:
[testng] 04:11:38,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:11:38,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:38,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-01_04-11-38.log]
[testng] 04:11:38,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@917d951 - End of configuration.
[testng] [2024-11-01 04:11:38,116] [pool-1-thread-7] Initializing /data/samples/24bit 300x200x3.ipm:
[testng] 04:11:38,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:11:38,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:38,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-01_04-11-38.log]
[testng] 04:11:38,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52ef61c1 - End of configuration.
[testng] [2024-11-01 04:11:38,214] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm:
[testng] 04:11:38,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:11:38,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:38,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-01_04-11-38.log]
[testng] 04:11:38,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@de2ffe - End of configuration.
[testng] [2024-11-01 04:11:38,304] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm:
[testng] 04:11:38,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:11:38,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:38,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-01_04-11-38.log]
[testng] 04:11:38,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc86abe - End of configuration.
[testng] [2024-11-01 04:11:38,397] [pool-1-thread-4] Initializing /data/jcb/200810162/wt BA plus bio.ipm:
[testng] 04:11:38,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:11:38,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:38,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-01_04-11-38.log]
[testng] 04:11:38,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ab0c96 - End of configuration.
[testng] [2024-11-01 04:11:38,494] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm:
[testng] 04:11:38,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:11:38,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:38,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-01_04-11-38.log]
[testng] 04:11:38,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1980ed5 - End of configuration.
[testng] [2024-11-01 04:11:38,596] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256xthree.ipm:
[testng] 04:11:38,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:11:38,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:38,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-01_04-11-38.log]
[testng] 04:11:38,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42d3203b - End of configuration.
[testng] [2024-11-01 04:11:41,618] [pool-1-thread-8] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm:
[testng] [2024-11-01 04:11:41,788] [pool-1-thread-12] Initializing /data/jcb/200810162/wt ba no bio.ipm:
[testng] [2024-11-01 04:11:42,048] [pool-1-thread-6] Initializing /data/jcb/200810162/mutBA plus bio.ipm:
[testng] [2024-11-01 04:11:42,187] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm:
[testng] [2024-11-01 04:11:42,326] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 901, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 seconds
Finished: SUCCESS