Started by upstream project "BIOFORMATS-test-repo" build number 242 originally caused by: Started by upstream project "Trigger" build number 267 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6444469908901125292.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38007_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:21:38,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:38,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:21:38,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:38,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:38,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:38,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:38,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:38,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:38,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:38,734 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:38,734 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:38,734 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:38,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:38,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:38,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:38,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:38,933 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:38,933 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:38,933 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:38,934 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:38,934 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:21:38,935 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:21:38,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-02 00:21:38,944] [main] java.version = 11.0.16 [testng] 00:21:38,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:38,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:38,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_00-21-38.log] [testng] 00:21:38,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-02 00:21:38,993] [main] testng.directory = /data [testng] [2024-11-02 00:21:38,993] [main] testng.configDirectory = /config [testng] [2024-11-02 00:21:39,003] [main] testng.multiplier = 1.0 [testng] [2024-11-02 00:21:39,004] [main] testng.in-memory = false [testng] [2024-11-02 00:21:39,004] [main] testng.allow-missing = false [testng] [2024-11-02 00:21:39,004] [main] user.language = en [testng] [2024-11-02 00:21:39,005] [main] user.country = ${user.country} [testng] [2024-11-02 00:21:39,005] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-02 00:21:42,979] [main] ---------------------------------------- [testng] [2024-11-02 00:21:42,979] [main] Total files: 103 [testng] [2024-11-02 00:21:42,979] [main] Scan time: 3.974 s (38 ms/file) [testng] [2024-11-02 00:21:42,979] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-02 00:22:00,640] [pool-1-thread-1] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] 00:22:00,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:00,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:00,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_00-22-00.log] [testng] 00:22:00,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@be7f87a - End of configuration. [testng] [2024-11-02 00:22:00,758] [pool-1-thread-12] Initializing /data/jay/smallerfile.dm3: [testng] 00:22:00,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:00,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:00,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_00-22-00.log] [testng] 00:22:00,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@217af219 - End of configuration. [testng] [2024-11-02 00:22:00,971] [pool-1-thread-11] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] 00:22:00,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:00,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:00,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_00-22-00.log] [testng] 00:22:00,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7447d428 - End of configuration. [testng] [2024-11-02 00:22:01,772] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] 00:22:01,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:01,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:01,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_00-22-01.log] [testng] 00:22:01,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7442a900 - End of configuration. [testng] [2024-11-02 00:22:01,896] [pool-1-thread-9] Initializing /data/jay/biosamplefullframe.dm3: [testng] 00:22:01,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:01,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:01,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_00-22-01.log] [testng] 00:22:01,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b54c21 - End of configuration. [testng] [2024-11-02 00:22:02,028] [pool-1-thread-8] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] 00:22:02,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:02,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_00-22-02.log] [testng] 00:22:02,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54bd2649 - End of configuration. [testng] [2024-11-02 00:22:02,191] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] 00:22:02,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:02,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:02,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_00-22-02.log] [testng] 00:22:02,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7a5c8a - End of configuration. [testng] [2024-11-02 00:22:03,127] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] 00:22:03,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:03,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:03,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_00-22-03.log] [testng] 00:22:03,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f042255 - End of configuration. [testng] [2024-11-02 00:22:03,278] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] 00:22:03,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:03,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:03,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_00-22-03.log] [testng] 00:22:03,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dc9e566 - End of configuration. [testng] [2024-11-02 00:22:03,404] [pool-1-thread-4] Initializing /data/melissa/annotation-test.tif: [testng] 00:22:03,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:03,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:03,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_00-22-03.log] [testng] 00:22:03,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b7b736 - End of configuration. [testng] [2024-11-02 00:22:04,379] [pool-1-thread-3] Initializing /data/jay/Carbon.34.dm3: [testng] 00:22:04,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:04,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:04,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_00-22-04.log] [testng] 00:22:04,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d87af9c - End of configuration. [testng] [2024-11-02 00:22:04,504] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] 00:22:04,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:04,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:04,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_00-22-04.log] [testng] 00:22:04,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b535aa - End of configuration. [testng] [2024-11-02 00:22:08,447] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2024-11-02 00:22:08,799] [pool-1-thread-12] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] [2024-11-02 00:22:09,477] [pool-1-thread-6] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [2024-11-02 00:22:09,628] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] [2024-11-02 00:22:10,512] [pool-1-thread-8] Initializing /data/jay/dnasample.tif: [testng] [2024-11-02 00:22:11,435] [pool-1-thread-1] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2024-11-02 00:22:11,641] [pool-1-thread-3] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2024-11-02 00:22:11,823] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2024-11-02 00:22:12,214] [pool-1-thread-4] Initializing /data/jay/DMtest2.dm3: [testng] [2024-11-02 00:22:12,361] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2024-11-02 00:22:13,338] [pool-1-thread-5] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2024-11-02 00:22:14,575] [pool-1-thread-3] Initializing /data/jay/recAmaghi.dm3: [testng] [2024-11-02 00:22:15,003] [pool-1-thread-12] Initializing /data/jay/ViewDMtest.dm3: [testng] [2024-11-02 00:22:17,134] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] [2024-11-02 00:22:17,379] [pool-1-thread-7] Initializing /data/samples/test-tiles.dm3: [testng] [2024-11-02 00:22:18,104] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2024-11-02 00:22:18,416] [pool-1-thread-6] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2024-11-02 00:22:19,294] [pool-1-thread-4] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-11-02 00:22:19,579] [pool-1-thread-1] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2024-11-02 00:22:20,791] [pool-1-thread-9] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-02 00:22:21,743] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2024-11-02 00:22:22,151] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2024-11-02 00:22:22,393] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2024-11-02 00:22:22,817] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2024-11-02 00:22:23,597] [pool-1-thread-4] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2024-11-02 00:22:23,798] [pool-1-thread-11] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2024-11-02 00:22:25,402] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2024-11-02 00:22:25,675] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2024-11-02 00:22:26,038] [pool-1-thread-12] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2024-11-02 00:22:28,496] [pool-1-thread-7] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-02 00:22:30,150] [pool-1-thread-6] Initializing /data/melissa/annotation-test.dm3: [testng] [2024-11-02 00:22:30,298] [pool-1-thread-10] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2024-11-02 00:22:31,636] [pool-1-thread-1] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2024-11-02 00:22:32,000] [pool-1-thread-5] Initializing /data/ofra/lowloss.dm3: [testng] [2024-11-02 00:22:32,746] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2024-11-02 00:22:32,925] [pool-1-thread-8] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2024-11-02 00:22:33,789] [pool-1-thread-6] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2024-11-02 00:22:34,638] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2024-11-02 00:22:35,904] [pool-1-thread-8] Initializing /data/jay/graphitedm3.dm3: [testng] [2024-11-02 00:22:36,421] [pool-1-thread-9] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2024-11-02 00:22:38,138] [pool-1-thread-12] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2024-11-02 00:22:39,807] [pool-1-thread-5] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2024-11-02 00:22:40,063] [pool-1-thread-9] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2024-11-02 00:22:41,318] [pool-1-thread-10] Initializing /data/jay/dnasample1.dm3: [testng] [2024-11-02 00:22:41,563] [pool-1-thread-6] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] [2024-11-02 00:22:42,967] [pool-1-thread-1] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2024-11-02 00:22:43,136] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2024-11-02 00:22:43,325] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] [2024-11-02 00:22:43,543] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2024-11-02 00:22:43,741] [pool-1-thread-8] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2024-11-02 00:22:44,920] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2024-11-02 00:22:46,697] [pool-1-thread-1] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2024-11-02 00:22:47,726] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2024-11-02 00:22:48,439] [pool-1-thread-10] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2024-11-02 00:22:48,711] [pool-1-thread-3] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2024-11-02 00:22:49,066] [pool-1-thread-7] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2024-11-02 00:22:49,364] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2024-11-02 00:22:49,905] [pool-1-thread-4] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] [2024-11-02 00:22:51,479] [pool-1-thread-6] Initializing /data/qa-7642/8.dm4: [testng] [2024-11-02 00:22:51,664] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2024-11-02 00:22:51,977] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2024-11-02 00:22:52,475] [pool-1-thread-4] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2024-11-02 00:22:53,550] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2024-11-02 00:22:53,865] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2024-11-02 00:22:54,057] [pool-1-thread-11] Initializing /data/qa-21761/example.dm4: [testng] [2024-11-02 00:22:54,321] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2024-11-02 00:22:56,518] [pool-1-thread-12] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2024-11-02 00:22:56,859] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2024-11-02 00:22:59,259] [pool-1-thread-6] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2024-11-02 00:22:59,492] [pool-1-thread-11] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2024-11-02 00:22:59,652] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2024-11-02 00:22:59,876] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2024-11-02 00:23:00,088] [pool-1-thread-2] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2024-11-02 00:23:01,090] [pool-1-thread-12] Initializing /data/jay/camtest1.dm3: [testng] [2024-11-02 00:23:01,943] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] [2024-11-02 00:23:02,280] [pool-1-thread-6] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2024-11-02 00:23:04,068] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2024-11-02 00:23:05,043] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2024-11-02 00:23:06,352] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2024-11-02 00:23:06,605] [pool-1-thread-5] Initializing /data/chip/Nanogold-1.dm3: [testng] [2024-11-02 00:23:07,119] [pool-1-thread-10] Initializing /data/jay/DMtest.dm3: [testng] [2024-11-02 00:23:07,362] [pool-1-thread-12] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2024-11-02 00:23:07,731] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2024-11-02 00:23:07,953] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] [2024-11-02 00:23:08,369] [pool-1-thread-4] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2024-11-02 00:23:09,789] [pool-1-thread-3] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 40 seconds Finished: SUCCESS