Started by upstream project "BIOFORMATS-test-repo" build number 242
originally caused by:
 Started by upstream project "Trigger" build number 267
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1791498238223100611.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38026_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:26:43,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:26:43,333 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 00:26:43,333 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:26:43,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:26:43,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:26:43,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:26:43,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:26:43,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:26:43,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:26:43,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:26:43,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:26:43,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:26:43,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:26:43,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:26:43,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:26:43,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:26:43,542 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:26:43,542 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:26:43,542 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:26:43,543 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:26:43,543 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 00:26:43,543 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 00:26:43,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-02 00:26:43,553] [main] java.version = 11.0.16
   [testng] 00:26:43,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:26:43,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:26:43,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_00-26-43.log]
   [testng] 00:26:43,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-02 00:26:43,625] [main] testng.directory = /data
   [testng] [2024-11-02 00:26:43,625] [main] testng.configDirectory = /config
   [testng] [2024-11-02 00:26:43,635] [main] testng.multiplier = 1.0
   [testng] [2024-11-02 00:26:43,636] [main] testng.in-memory = false
   [testng] [2024-11-02 00:26:43,636] [main] testng.allow-missing = false
   [testng] [2024-11-02 00:26:43,636] [main] user.language = en
   [testng] [2024-11-02 00:26:43,637] [main] user.country = ${user.country}
   [testng] [2024-11-02 00:26:43,637] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-02 00:26:44,213] [main] ----------------------------------------
   [testng] [2024-11-02 00:26:44,213] [main] Total files: 22
   [testng] [2024-11-02 00:26:44,213] [main] Scan time: 0.576 s (26 ms/file)
   [testng] [2024-11-02 00:26:44,213] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 22 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-02 00:28:38,943] [pool-1-thread-1] Initializing /data/imagej/blood-brain-barrier.zip: 
   [testng] 00:28:38,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:28:38,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:28:38,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_00-28-38.log]
   [testng] 00:28:38,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b06aaa2 - End of configuration.
   [testng] [2024-11-02 00:28:49,420] [pool-1-thread-12] Initializing /data/imagej/confocal-series.zip: 
   [testng] 00:28:49,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:28:49,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:28:49,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_00-28-49.log]
   [testng] 00:28:49,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f648f92 - End of configuration.
   [testng] [2024-11-02 00:28:57,322] [pool-1-thread-11] Initializing /data/imagej/m51.zip: 
   [testng] 00:28:57,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:28:57,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:28:57,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_00-28-57.log]
   [testng] 00:28:57,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9215979 - End of configuration.
   [testng] [2024-11-02 00:28:59,199] [pool-1-thread-10] Initializing /data/imagej/xrays.zip: 
   [testng] 00:28:59,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:28:59,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:28:59,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_00-28-59.log]
   [testng] 00:28:59,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d0e5c37 - End of configuration.
   [testng] [2024-11-02 00:29:01,226] [pool-1-thread-9] Initializing /data/imagej/se3.zip: 
   [testng] 00:29:01,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:29:01,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:01,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_00-29-01.log]
   [testng] 00:29:01,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28b95d44 - End of configuration.
   [testng] [2024-11-02 00:29:09,646] [pool-1-thread-8] Initializing /data/imagej/mri-stack.zip: 
   [testng] 00:29:09,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:29:09,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:09,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_00-29-09.log]
   [testng] 00:29:09,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e9d855 - End of configuration.
   [testng] [2024-11-02 00:29:12,020] [pool-1-thread-7] Initializing /data/imagej/RatBrain.zip: 
   [testng] 00:29:12,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:29:12,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:12,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_00-29-12.log]
   [testng] 00:29:12,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f1167b - End of configuration.
   [testng] [2024-11-02 00:29:15,336] [pool-1-thread-6] Initializing /data/imagej/scala-media.zip: 
   [testng] 00:29:15,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:29:15,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:15,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_00-29-15.log]
   [testng] 00:29:15,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eae2cd8 - End of configuration.
   [testng] [2024-11-02 00:29:17,619] [pool-1-thread-5] Initializing /data/imagej/3D_Chromosome.zip: 
   [testng] 00:29:17,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:29:17,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:17,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_00-29-17.log]
   [testng] 00:29:17,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a8b32e2 - End of configuration.
   [testng] [2024-11-02 00:29:20,374] [pool-1-thread-4] Initializing /data/imagej/gel-electrophoresis.zip: 
   [testng] 00:29:20,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:29:20,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:20,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_00-29-20.log]
   [testng] 00:29:20,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22bea41 - End of configuration.
   [testng] [2024-11-02 00:29:23,852] [pool-1-thread-3] Initializing /data/imagej/flybrain.zip: 
   [testng] 00:29:23,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:29:23,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:23,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_00-29-23.log]
   [testng] 00:29:23,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190a1859 - End of configuration.
   [testng] [2024-11-02 00:29:35,308] [pool-1-thread-2] Initializing /data/imagej/hela-cells.zip: 
   [testng] 00:29:35,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:29:35,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:29:35,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_00-29-35.log]
   [testng] 00:29:35,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f79fc8 - End of configuration.
   [testng] [2024-11-02 00:30:02,044] [pool-1-thread-10] Initializing /data/samples/bat-cochlea-volume.zip: 
   [testng] [2024-11-02 00:30:06,304] [pool-1-thread-11] Initializing /data/imagej/fat-cells.zip: 
   [testng] [2024-11-02 00:30:11,274] [pool-1-thread-6] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: 
   [testng] [2024-11-02 00:30:15,913] [pool-1-thread-8] Initializing /data/imagej/cheetah_256_8.tif.zip: 
   [testng] [2024-11-02 00:30:19,055] [pool-1-thread-7] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: 
   [testng] [2024-11-02 00:30:28,807] [pool-1-thread-5] Initializing /data/imagej/FluorescentCells.zip: 
   [testng] [2024-11-02 00:30:48,210] [pool-1-thread-2] Initializing /data/imagej/confocal-stack.zip: 
   [testng] [2024-11-02 00:31:11,142] [pool-1-thread-5] Initializing /data/imagej/watershed-animation.zip: 
   [testng] [2024-11-02 00:31:13,267] [pool-1-thread-8] Initializing /data/samples/sdub.zip: 
   [testng] [2024-11-02 00:31:14,637] [pool-1-thread-4] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1166, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 9 minutes 13 seconds
Finished: SUCCESS