Started by upstream project "BIOFORMATS-test-repo" build number 242
originally caused by:
Started by upstream project "Trigger" build number 267
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins8134303738938802650.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38071_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:14:00,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:14:00,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:14:00,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:14:00,671 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:14:00,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:14:00,672 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:14:00,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:14:00,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:14:00,673 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:14:00,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:14:00,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:14:00,675 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:14:00,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:14:00,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:14:00,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:14:00,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:14:00,905 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:14:00,906 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:14:00,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:14:00,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:14:00,906 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:14:00,907 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:14:00,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 234 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-02 01:14:00,917] [main] java.version = 11.0.16
[testng] 01:14:00,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:14:00,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:14:00,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_01-14-00.log]
[testng] 01:14:00,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-02 01:14:00,983] [main] testng.directory = /data
[testng] [2024-11-02 01:14:00,983] [main] testng.configDirectory = /config
[testng] [2024-11-02 01:14:00,993] [main] testng.multiplier = 1.0
[testng] [2024-11-02 01:14:00,995] [main] testng.in-memory = false
[testng] [2024-11-02 01:14:00,995] [main] testng.allow-missing = false
[testng] [2024-11-02 01:14:00,995] [main] user.language = en
[testng] [2024-11-02 01:14:00,995] [main] user.country = ${user.country}
[testng] [2024-11-02 01:14:00,995] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-02 01:14:31,764] [main] ----------------------------------------
[testng] [2024-11-02 01:14:31,764] [main] Total files: 25
[testng] [2024-11-02 01:14:31,764] [main] Scan time: 30.769 s (1230 ms/file)
[testng] [2024-11-02 01:14:31,764] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-02 01:15:07,812] [pool-1-thread-1] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] 01:15:07,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:15:07,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:07,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_01-15-07.log]
[testng] 01:15:07,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b3cc4df - End of configuration.
[testng] [2024-11-02 01:15:08,331] [pool-1-thread-12] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 01:15:08,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:15:08,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:08,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_01-15-08.log]
[testng] 01:15:08,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23b5f3d9 - End of configuration.
[testng] [2024-11-02 01:15:08,854] [pool-1-thread-11] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] 01:15:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:15:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:08,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_01-15-08.log]
[testng] 01:15:08,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@603a6fee - End of configuration.
[testng] [2024-11-02 01:15:08,959] [pool-1-thread-10] Initializing /data/pang/10500x-o4:
[testng] 01:15:08,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:15:08,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:08,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_01-15-08.log]
[testng] 01:15:08,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47d3b024 - End of configuration.
[testng] [2024-11-02 01:15:09,611] [pool-1-thread-9] Initializing /data/imagic/13008.dm2:
[testng] 01:15:09,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:15:09,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:09,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_01-15-09.log]
[testng] 01:15:09,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7988aee7 - End of configuration.
[testng] [2024-11-02 01:15:10,004] [pool-1-thread-8] Initializing /data/pang/grating025k.dm2:
[testng] 01:15:10,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:15:10,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:10,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_01-15-10.log]
[testng] 01:15:10,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b756b92 - End of configuration.
[testng] [2024-11-02 01:15:10,548] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] 01:15:10,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:15:10,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:10,549 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_01-15-10.log]
[testng] 01:15:10,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23283b67 - End of configuration.
[testng] [2024-11-02 01:15:10,636] [pool-1-thread-6] Initializing /data/pang/signed:
[testng] 01:15:10,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:15:10,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:10,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_01-15-10.log]
[testng] 01:15:10,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5262b3ca - End of configuration.
[testng] [2024-11-02 01:15:11,052] [pool-1-thread-5] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] 01:15:11,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:15:11,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:11,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_01-15-11.log]
[testng] 01:15:11,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3efd12c2 - End of configuration.
[testng] [2024-11-02 01:15:11,553] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] 01:15:11,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:15:11,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:11,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_01-15-11.log]
[testng] 01:15:11,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a24530 - End of configuration.
[testng] [2024-11-02 01:15:11,632] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng] 01:15:11,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:15:11,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:11,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_01-15-11.log]
[testng] 01:15:11,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a676a78 - End of configuration.
[testng] [2024-11-02 01:15:12,194] [pool-1-thread-2] Initializing /data/imagic/TEM 10118.dm2:
[testng] 01:15:12,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:15:12,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:15:12,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_01-15-12.log]
[testng] 01:15:12,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3922676e - End of configuration.
[testng] [2024-11-02 01:15:16,413] [pool-1-thread-7] Initializing /data/pang/unproc-auto:
[testng] [2024-11-02 01:15:16,879] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] [2024-11-02 01:15:16,960] [pool-1-thread-11] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] [2024-11-02 01:15:17,494] [pool-1-thread-5] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] [2024-11-02 01:15:17,583] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] [2024-11-02 01:15:17,692] [pool-1-thread-6] Initializing /data/imagic/1-1.dm2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 25 seconds
Finished: SUCCESS