Started by upstream project "BIOFORMATS-test-repo" build number 242
originally caused by:
 Started by upstream project "Trigger" build number 267
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins18101720026274977037.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38121_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:59:06,139 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:59:06,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 02:59:06,141 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:59:06,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:59:06,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:59:06,143 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:59:06,143 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:59:06,143 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:59:06,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:59:06,144 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:59:06,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:59:06,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:59:06,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:59:06,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:59:06,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:59:06,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:59:06,348 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:59:06,348 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:59:06,348 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:59:06,349 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:59:06,349 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 02:59:06,350 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 02:59:06,350 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 206 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-02 02:59:06,359] [main] java.version = 11.0.16
   [testng] 02:59:06,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:59:06,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:59:06,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_02-59-06.log]
   [testng] 02:59:06,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-02 02:59:06,410] [main] testng.directory = /data
   [testng] [2024-11-02 02:59:06,410] [main] testng.configDirectory = /config
   [testng] [2024-11-02 02:59:06,420] [main] testng.multiplier = 1.0
   [testng] [2024-11-02 02:59:06,422] [main] testng.in-memory = false
   [testng] [2024-11-02 02:59:06,422] [main] testng.allow-missing = false
   [testng] [2024-11-02 02:59:06,422] [main] user.language = en
   [testng] [2024-11-02 02:59:06,422] [main] user.country = ${user.country}
   [testng] [2024-11-02 02:59:06,422] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-02 02:59:29,710] [main] ----------------------------------------
   [testng] [2024-11-02 02:59:29,710] [main] Total files: 68
   [testng] [2024-11-02 02:59:29,710] [main] Scan time: 23.288 s (342 ms/file)
   [testng] [2024-11-02 02:59:29,710] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 60 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-02 03:00:05,139] [pool-1-thread-1] Initializing /data/generated/10-31_E_t0015.ims: 
   [testng] 03:00:05,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:00:05,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:05,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_03-00-05.log]
   [testng] 03:00:05,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57d60146 - End of configuration.
   [testng] [2024-11-02 03:00:05,271] [pool-1-thread-12] Initializing /data/public/davemason/TransFactors_2C_34Z_SRRF.ims: 
   [testng] 03:00:05,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 03:00:05,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:05,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_03-00-05.log]
   [testng] 03:00:05,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c1420d - End of configuration.
   [testng] [2024-11-02 03:00:05,462] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0004.ims: 
   [testng] 03:00:05,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 03:00:05,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:05,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_03-00-05.log]
   [testng] 03:00:05,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@270205f1 - End of configuration.
   [testng] [2024-11-02 03:00:05,544] [pool-1-thread-10] Initializing /data/public/davemason/Convallaria_3C_1T_confocal_IMS3.ims: 
   [testng] 03:00:05,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:00:05,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:05,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_03-00-05.log]
   [testng] 03:00:05,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d17e63e - End of configuration.
   [testng] [2024-11-02 03:00:05,717] [pool-1-thread-9] Initializing /data/jason/imaris_5_5_demoimages/retina.ims: 
   [testng] 03:00:05,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:00:05,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:05,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_03-00-05.log]
   [testng] 03:00:05,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d5ddde - End of configuration.
   [testng] [2024-11-02 03:00:05,996] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0006.ims: 
   [testng] 03:00:05,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:00:05,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:05,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_03-00-05.log]
   [testng] 03:00:05,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c23f5bb - End of configuration.
   [testng] [2024-11-02 03:00:06,141] [pool-1-thread-7] Initializing /data/public/eliana/2016-07-26_17.11.03_Sample Prefix_5P298C2_Protocol.ims: 
   [testng] 03:00:06,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:00:06,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:06,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_03-00-06.log]
   [testng] 03:00:06,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c32410 - End of configuration.
   [testng] [2024-11-02 03:00:06,366] [pool-1-thread-6] Initializing /data/qa-17839/Fusion _Stack.ims: 
   [testng] 03:00:06,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:00:06,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:06,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_03-00-06.log]
   [testng] 03:00:06,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c0d7c0b - End of configuration.
   [testng] [2024-11-02 03:00:06,540] [pool-1-thread-5] Initializing /data/oliver/Stack2_float32Bit.ims: 
   [testng] 03:00:06,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:00:06,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:06,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_03-00-06.log]
   [testng] 03:00:06,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@379cdefe - End of configuration.
   [testng] [2024-11-02 03:00:06,753] [pool-1-thread-4] Initializing /data/qa-4898/o383_1_457_CS_r1.ims: 
   [testng] 03:00:06,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:00:06,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:06,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_03-00-06.log]
   [testng] 03:00:06,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@450349e8 - End of configuration.
   [testng] [2024-11-02 03:00:07,009] [pool-1-thread-3] Initializing /data/public/davemason/Convallaria_3C_1T_2x2grid_confocal.ims: 
   [testng] 03:00:07,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:00:07,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:07,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_03-00-07.log]
   [testng] 03:00:07,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@689cf560 - End of configuration.
   [testng] [2024-11-02 03:00:07,221] [pool-1-thread-2] Initializing /data/generated/MF-2CH-Z-T.ims: 
   [testng] 03:00:07,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:00:07,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:07,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_03-00-07.log]
   [testng] 03:00:07,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@531ac70e - End of configuration.

BUILD SUCCESSFUL
Total time: 2 minutes 58 seconds
Finished: SUCCESS