Started by upstream project "BIOFORMATS-test-repo" build number 243
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9026008194120951911.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38206_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 14:11:58,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 14:11:58,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 14:11:58,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 14:11:58,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 14:11:58,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 14:11:58,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 14:11:58,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 14:11:58,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 14:11:58,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 14:11:58,429 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 14:11:58,429 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 14:11:58,429 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 14:11:58,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 14:11:58,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 14:11:58,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 14:11:58,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 14:11:58,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 14:11:58,676 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 14:11:58,676 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 14:11:58,676 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 14:11:58,676 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 14:11:58,677 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 14:11:58,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 249 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-02 14:11:58,688] [main] java.version = 11.0.16
[testng] 14:11:58,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 14:11:58,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:11:58,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_14-11-58.log]
[testng] 14:11:58,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-02 14:11:58,745] [main] testng.directory = /data
[testng] [2024-11-02 14:11:58,746] [main] testng.configDirectory = /config
[testng] [2024-11-02 14:11:58,758] [main] testng.multiplier = 1.0
[testng] [2024-11-02 14:11:58,759] [main] testng.in-memory = false
[testng] [2024-11-02 14:11:58,759] [main] testng.allow-missing = false
[testng] [2024-11-02 14:11:58,759] [main] user.language = en
[testng] [2024-11-02 14:11:58,760] [main] user.country = ${user.country}
[testng] [2024-11-02 14:11:58,760] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-02 14:11:59,248] [main] ----------------------------------------
[testng] [2024-11-02 14:11:59,249] [main] Total files: 21
[testng] [2024-11-02 14:11:59,249] [main] Scan time: 0.488 s (23 ms/file)
[testng] [2024-11-02 14:11:59,249] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-02 14:12:03,222] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA:
[testng] 14:12:03,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 14:12:03,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:03,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_14-12-03.log]
[testng] 14:12:03,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ca4d96 - End of configuration.
[testng] [2024-11-02 14:12:03,377] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA:
[testng] 14:12:03,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 14:12:03,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:03,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_14-12-03.log]
[testng] 14:12:03,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7548f133 - End of configuration.
[testng] [2024-11-02 14:12:03,560] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA:
[testng] 14:12:03,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 14:12:03,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:03,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_14-12-03.log]
[testng] 14:12:03,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e520269 - End of configuration.
[testng] [2024-11-02 14:12:03,771] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA:
[testng] 14:12:03,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 14:12:03,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:03,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_14-12-03.log]
[testng] 14:12:03,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25329239 - End of configuration.
[testng] [2024-11-02 14:12:03,957] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA:
[testng] 14:12:03,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 14:12:03,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:03,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_14-12-03.log]
[testng] 14:12:03,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63047687 - End of configuration.
[testng] [2024-11-02 14:12:04,142] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA:
[testng] 14:12:04,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 14:12:04,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:04,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_14-12-04.log]
[testng] 14:12:04,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53afc15b - End of configuration.
[testng] [2024-11-02 14:12:04,322] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA:
[testng] 14:12:04,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 14:12:04,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:04,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_14-12-04.log]
[testng] 14:12:04,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e297166 - End of configuration.
[testng] [2024-11-02 14:12:04,502] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA:
[testng] 14:12:04,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 14:12:04,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:04,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_14-12-04.log]
[testng] 14:12:04,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b8bca5c - End of configuration.
[testng] [2024-11-02 14:12:04,678] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA:
[testng] 14:12:04,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 14:12:04,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:04,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_14-12-04.log]
[testng] 14:12:04,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@349d5edb - End of configuration.
[testng] [2024-11-02 14:12:04,853] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA:
[testng] 14:12:04,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 14:12:04,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:04,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_14-12-04.log]
[testng] 14:12:04,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3024f2d7 - End of configuration.
[testng] [2024-11-02 14:12:05,023] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA:
[testng] 14:12:05,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 14:12:05,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:05,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_14-12-05.log]
[testng] 14:12:05,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c05358e - End of configuration.
[testng] [2024-11-02 14:12:05,192] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA:
[testng] 14:12:05,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 14:12:05,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:12:05,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_14-12-05.log]
[testng] 14:12:05,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad9b20d - End of configuration.
[testng] [2024-11-02 14:12:08,505] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA:
[testng] [2024-11-02 14:12:08,687] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA:
[testng] [2024-11-02 14:12:08,860] [pool-1-thread-6] Initializing /data/samples/FLAG_T32.TGA:
[testng] [2024-11-02 14:12:09,029] [pool-1-thread-9] Initializing /data/samples/UCM8.TGA:
[testng] [2024-11-02 14:12:09,172] [pool-1-thread-8] Initializing /data/samples/CBW8.TGA:
[testng] [2024-11-02 14:12:09,317] [pool-1-thread-4] Initializing /data/samples/XING_T16.TGA:
[testng] [2024-11-02 14:12:09,490] [pool-1-thread-10] Initializing /data/samples/XING_B16.TGA:
[testng] [2024-11-02 14:12:09,669] [pool-1-thread-3] Initializing /data/samples/UTC24.TGA:
[testng] [2024-11-02 14:12:09,840] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 17 seconds
Finished: SUCCESS