Started by upstream project "BIOFORMATS-test-repo" build number 243
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4051805916530252603.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38249_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 15:06:33,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 15:06:33,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 15:06:33,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:06:33,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:06:33,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 15:06:33,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 15:06:33,922 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 15:06:33,922 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:06:33,923 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:06:33,923 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 15:06:33,923 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 15:06:33,924 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 15:06:34,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 15:06:34,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 15:06:34,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 15:06:34,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 15:06:34,164 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 15:06:34,164 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 15:06:34,164 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 15:06:34,164 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 15:06:34,165 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 15:06:34,166 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 15:06:34,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 243 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-02 15:06:34,180] [main] java.version = 11.0.16
[testng] 15:06:34,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 15:06:34,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:34,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_15-06-34.log]
[testng] 15:06:34,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-02 15:06:34,250] [main] testng.directory = /data
[testng] [2024-11-02 15:06:34,250] [main] testng.configDirectory = /config
[testng] [2024-11-02 15:06:34,260] [main] testng.multiplier = 1.0
[testng] [2024-11-02 15:06:34,262] [main] testng.in-memory = false
[testng] [2024-11-02 15:06:34,262] [main] testng.allow-missing = false
[testng] [2024-11-02 15:06:34,262] [main] user.language = en
[testng] [2024-11-02 15:06:34,262] [main] user.country = ${user.country}
[testng] [2024-11-02 15:06:34,262] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-02 15:06:36,513] [main] ----------------------------------------
[testng] [2024-11-02 15:06:36,513] [main] Total files: 16
[testng] [2024-11-02 15:06:36,514] [main] Scan time: 2.251 s (140 ms/file)
[testng] [2024-11-02 15:06:36,514] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-02 15:06:55,408] [pool-1-thread-1] Initializing /data/samples/5358.afi:
[testng] 15:06:55,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 15:06:55,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:55,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_15-06-55.log]
[testng] 15:06:55,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54ae3410 - End of configuration.
[testng] [2024-11-02 15:06:56,137] [pool-1-thread-12] Initializing /data/samples/5339.afi:
[testng] 15:06:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 15:06:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:56,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_15-06-56.log]
[testng] 15:06:56,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc8e8ad - End of configuration.
[testng] [2024-11-02 15:06:56,722] [pool-1-thread-11] Initializing /data/samples/5407.afi:
[testng] 15:06:56,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 15:06:56,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:56,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_15-06-56.log]
[testng] 15:06:56,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60071546 - End of configuration.
[testng] [2024-11-02 15:06:57,302] [pool-1-thread-10] Initializing /data/samples/5371.afi:
[testng] 15:06:57,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 15:06:57,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:57,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_15-06-57.log]
[testng] 15:06:57,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc39050 - End of configuration.
[testng] [2024-11-02 15:06:58,069] [pool-1-thread-9] Initializing /data/samples/5306.afi:
[testng] 15:06:58,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 15:06:58,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:58,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_15-06-58.log]
[testng] 15:06:58,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba8dee0 - End of configuration.
[testng] [2024-11-02 15:06:58,718] [pool-1-thread-8] Initializing /data/samples/5387.afi:
[testng] 15:06:58,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 15:06:58,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:58,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_15-06-58.log]
[testng] 15:06:58,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f94794b - End of configuration.
[testng] [2024-11-02 15:06:59,255] [pool-1-thread-7] Initializing /data/samples/5351.afi:
[testng] 15:06:59,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 15:06:59,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:59,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_15-06-59.log]
[testng] 15:06:59,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd94e65 - End of configuration.
[testng] [2024-11-02 15:06:59,929] [pool-1-thread-6] Initializing /data/samples/5383.afi:
[testng] 15:06:59,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 15:06:59,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:06:59,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_15-06-59.log]
[testng] 15:06:59,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7b84e - End of configuration.
[testng] [2024-11-02 15:07:00,543] [pool-1-thread-5] Initializing /data/samples/5347.afi:
[testng] 15:07:00,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 15:07:00,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:07:00,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_15-07-00.log]
[testng] 15:07:00,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eaaaea6 - End of configuration.
[testng] [2024-11-02 15:07:01,337] [pool-1-thread-4] Initializing /data/samples/5400.afi:
[testng] 15:07:01,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 15:07:01,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:07:01,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_15-07-01.log]
[testng] 15:07:01,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f8b103 - End of configuration.
[testng] [2024-11-02 15:07:01,980] [pool-1-thread-3] Initializing /data/samples/5446.afi:
[testng] 15:07:01,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 15:07:01,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:07:01,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_15-07-01.log]
[testng] 15:07:01,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d61a2a1 - End of configuration.
[testng] [2024-11-02 15:07:02,741] [pool-1-thread-2] Initializing /data/samples/5365.afi:
[testng] 15:07:02,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 15:07:02,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:07:02,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_15-07-02.log]
[testng] 15:07:02,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@240cd427 - End of configuration.
[testng] [2024-11-02 15:07:50,430] [pool-1-thread-9] Initializing /data/samples/5414.afi:
[testng] [2024-11-02 15:07:51,191] [pool-1-thread-1] Initializing /data/samples/5440.afi:
[testng] [2024-11-02 15:08:00,152] [pool-1-thread-3] Initializing /data/samples/5343.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 21 seconds
Finished: SUCCESS