Started by upstream project "BIOFORMATS-test-repo" build number 29
originally caused by:
Started by upstream project "Trigger" build number 32
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12412782399015421386.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3825_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:48:47,108 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:48:47,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 01:48:47,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:48:47,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:48:47,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:48:47,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:48:47,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:48:47,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:48:47,115 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:48:47,116 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:48:47,116 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:48:47,117 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:48:47,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:48:47,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:48:47,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:48:47,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:48:47,385 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:48:47,386 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:48:47,386 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:48:47,386 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:48:47,386 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 01:48:47,387 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 01:48:47,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-10 01:48:47,398] [main] java.version = 17.0.2
[testng] 01:48:47,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:48:47,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:47,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-10_01-48-47.log]
[testng] 01:48:47,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-10 01:48:47,454] [main] testng.directory = /data
[testng] [2024-04-10 01:48:47,454] [main] testng.configDirectory = /config
[testng] [2024-04-10 01:48:47,464] [main] testng.multiplier = 1.0
[testng] [2024-04-10 01:48:47,465] [main] testng.in-memory = false
[testng] [2024-04-10 01:48:47,465] [main] testng.allow-missing = false
[testng] [2024-04-10 01:48:47,465] [main] user.language = en
[testng] [2024-04-10 01:48:47,465] [main] user.country = ${user.country}
[testng] [2024-04-10 01:48:47,466] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-10 01:48:48,086] [main] ----------------------------------------
[testng] [2024-04-10 01:48:48,086] [main] Total files: 16
[testng] [2024-04-10 01:48:48,086] [main] Scan time: 0.62 s (38 ms/file)
[testng] [2024-04-10 01:48:48,086] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-10 01:48:58,467] [pool-1-thread-1] Initializing /data/samples/5347.afi:
[testng] 01:48:58,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:48:58,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:58,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-10_01-48-58.log]
[testng] 01:48:58,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358c545f - End of configuration.
[testng] [2024-04-10 01:48:58,602] [pool-1-thread-12] Initializing /data/samples/5414.afi:
[testng] 01:48:58,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:48:58,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:58,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-10_01-48-58.log]
[testng] 01:48:58,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74b2f251 - End of configuration.
[testng] [2024-04-10 01:48:58,815] [pool-1-thread-11] Initializing /data/samples/5407.afi:
[testng] 01:48:58,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:48:58,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:58,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-10_01-48-58.log]
[testng] 01:48:58,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@575ec31e - End of configuration.
[testng] [2024-04-10 01:48:58,910] [pool-1-thread-10] Initializing /data/samples/5351.afi:
[testng] 01:48:58,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:48:58,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:58,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-10_01-48-58.log]
[testng] 01:48:58,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ddc21db - End of configuration.
[testng] [2024-04-10 01:48:59,060] [pool-1-thread-9] Initializing /data/samples/5343.afi:
[testng] 01:48:59,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:48:59,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-10_01-48-59.log]
[testng] 01:48:59,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100749c1 - End of configuration.
[testng] [2024-04-10 01:48:59,183] [pool-1-thread-8] Initializing /data/samples/5383.afi:
[testng] 01:48:59,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:48:59,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-10_01-48-59.log]
[testng] 01:48:59,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52dbcbf - End of configuration.
[testng] [2024-04-10 01:48:59,277] [pool-1-thread-7] Initializing /data/samples/5440.afi:
[testng] 01:48:59,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:48:59,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-10_01-48-59.log]
[testng] 01:48:59,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b5c6bf1 - End of configuration.
[testng] [2024-04-10 01:48:59,368] [pool-1-thread-6] Initializing /data/samples/5358.afi:
[testng] 01:48:59,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:48:59,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-10_01-48-59.log]
[testng] 01:48:59,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c606689 - End of configuration.
[testng] [2024-04-10 01:48:59,504] [pool-1-thread-5] Initializing /data/samples/5365.afi:
[testng] 01:48:59,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:48:59,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-10_01-48-59.log]
[testng] 01:48:59,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47afd8c1 - End of configuration.
[testng] [2024-04-10 01:48:59,658] [pool-1-thread-4] Initializing /data/samples/5446.afi:
[testng] 01:48:59,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:48:59,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-10_01-48-59.log]
[testng] 01:48:59,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3959aa - End of configuration.
[testng] [2024-04-10 01:48:59,778] [pool-1-thread-3] Initializing /data/samples/5371.afi:
[testng] 01:48:59,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:48:59,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-10_01-48-59.log]
[testng] 01:48:59,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e7498d - End of configuration.
[testng] [2024-04-10 01:48:59,911] [pool-1-thread-2] Initializing /data/samples/5387.afi:
[testng] 01:48:59,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:48:59,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:48:59,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-10_01-48-59.log]
[testng] 01:48:59,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a506c95 - End of configuration.
[testng] [2024-04-10 01:49:57,872] [pool-1-thread-6] Initializing /data/samples/5306.afi:
[testng] [2024-04-10 01:49:59,629] [pool-1-thread-4] Initializing /data/samples/5400.afi:
[testng] [2024-04-10 01:50:02,168] [pool-1-thread-5] Initializing /data/samples/5339.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 19 seconds
Finished: SUCCESS