Started by upstream project "BIOFORMATS-test-repo" build number 243
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10337698187461214861.sh
+ '[' sxm = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38257_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 15:13:36,194 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 15:13:36,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 15:13:36,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:13:36,197 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:13:36,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 15:13:36,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 15:13:36,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 15:13:36,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:13:36,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:13:36,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 15:13:36,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 15:13:36,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 15:13:36,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 15:13:36,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 15:13:36,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 15:13:36,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 15:13:36,422 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 15:13:36,422 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 15:13:36,422 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 15:13:36,423 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 15:13:36,423 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 15:13:36,424 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 15:13:36,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 225 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-02 15:13:36,434] [main] java.version = 11.0.16
[testng] 15:13:36,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 15:13:36,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:13:36,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_15-13-36.log]
[testng] 15:13:36,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-02 15:13:36,493] [main] testng.directory = /data
[testng] [2024-11-02 15:13:36,494] [main] testng.configDirectory = /config
[testng] [2024-11-02 15:13:36,522] [main] testng.multiplier = 1.0
[testng] [2024-11-02 15:13:36,524] [main] testng.in-memory = false
[testng] [2024-11-02 15:13:36,524] [main] testng.allow-missing = false
[testng] [2024-11-02 15:13:36,524] [main] user.language = en
[testng] [2024-11-02 15:13:36,524] [main] user.country = ${user.country}
[testng] [2024-11-02 15:13:36,524] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-02 15:15:54,508] [main] ----------------------------------------
[testng] [2024-11-02 15:15:54,509] [main] Total files: 268
[testng] [2024-11-02 15:15:54,509] [main] Scan time: 137.984 s (514 ms/file)
[testng] [2024-11-02 15:15:54,509] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 160 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-02 15:19:41,478] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG:
[testng] 15:19:41,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 15:19:41,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:41,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_15-19-41.log]
[testng] 15:19:41,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@408656cb - End of configuration.
[testng] [2024-11-02 15:19:41,948] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG:
[testng] 15:19:41,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 15:19:41,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:41,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_15-19-41.log]
[testng] 15:19:41,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497e252c - End of configuration.
[testng] [2024-11-02 15:19:42,216] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack:
[testng] 15:19:42,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 15:19:42,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:42,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_15-19-42.log]
[testng] 15:19:42,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49f800c0 - End of configuration.
[testng] [2024-11-02 15:19:43,353] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR:
[testng] 15:19:43,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 15:19:43,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:43,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_15-19-43.log]
[testng] 15:19:43,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5034a93b - End of configuration.
[testng] [2024-11-02 15:19:43,732] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm:
[testng] 15:19:43,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 15:19:43,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:43,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_15-19-43.log]
[testng] 15:19:43,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f903c6 - End of configuration.
[testng] [2024-11-02 15:19:44,063] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR:
[testng] 15:19:44,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 15:19:44,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:44,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_15-19-44.log]
[testng] 15:19:44,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@268c4f21 - End of configuration.
[testng] [2024-11-02 15:19:44,354] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF:
[testng] 15:19:44,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 15:19:44,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:44,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_15-19-44.log]
[testng] 15:19:44,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d3d46d5 - End of configuration.
[testng] [2024-11-02 15:19:45,420] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG:
[testng] 15:19:45,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 15:19:45,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:45,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_15-19-45.log]
[testng] 15:19:45,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1302c3 - End of configuration.
[testng] [2024-11-02 15:19:45,690] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm:
[testng] 15:19:45,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 15:19:45,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:45,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_15-19-45.log]
[testng] 15:19:45,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@252c3fb0 - End of configuration.
[testng] [2024-11-02 15:19:45,983] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits:
[testng] 15:19:45,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 15:19:45,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:45,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_15-19-45.log]
[testng] 15:19:45,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2456e3da - End of configuration.
[testng] [2024-11-02 15:19:46,059] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif:
[testng] 15:19:46,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 15:19:46,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:46,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_15-19-46.log]
[testng] 15:19:46,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78cda41f - End of configuration.
[testng] [2024-11-02 15:19:47,102] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif:
[testng] 15:19:47,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 15:19:47,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:19:47,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_15-19-47.log]
[testng] 15:19:47,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c63b372 - End of configuration.
[testng] [2024-11-02 15:19:50,729] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm:
[testng] [2024-11-02 15:19:52,383] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2:
[testng] [2024-11-02 15:19:52,759] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img:
[testng] [2024-11-02 15:19:54,001] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF:
[testng] [2024-11-02 15:19:55,065] [pool-1-thread-8] Initializing /data/steve/TIFF/ta269 TIFF:
[testng] [2024-11-02 15:19:56,184] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif:
[testng] [2024-11-02 15:19:57,378] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI:
[testng] [2024-11-02 15:20:00,739] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5:
[testng] [2024-11-02 15:20:01,128] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG:
[testng] [2024-11-02 15:20:01,798] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE:
[testng] [2024-11-02 15:20:02,055] [pool-1-thread-4] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV:
[testng] [2024-11-02 15:20:03,486] [pool-1-thread-7] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM:
[testng] [2024-11-02 15:20:04,702] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA:
[testng] [2024-11-02 15:20:05,088] [pool-1-thread-3] Initializing /data/steve/TIFF/CD-ROM TIFF:
[testng] [2024-11-02 15:20:06,217] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm:
[testng] [2024-11-02 15:20:08,135] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2:
[testng] [2024-11-02 15:20:08,649] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-30.IMG:
[testng] [2024-11-02 15:20:10,520] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG:
[testng] [2024-11-02 15:20:11,108] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF:
[testng] [2024-11-02 15:20:12,219] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL:
[testng] [2024-11-02 15:20:12,554] [pool-1-thread-12] Initializing /data/steve/SBIG/M82 H 100s Tr=10s:
[testng] [2024-11-02 15:20:13,750] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi:
[testng] [2024-11-02 15:20:14,018] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm:
[testng] [2024-11-02 15:20:14,717] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee:
[testng] [2024-11-02 15:20:15,002] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG:
[testng] [2024-11-02 15:20:16,703] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG:
[testng] [2024-11-02 15:20:19,618] [pool-1-thread-1] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR:
[testng] [2024-11-02 15:20:21,712] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI:
[testng] [2024-11-02 15:20:24,043] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm:
[testng] [2024-11-02 15:20:25,128] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2:
[testng] [2024-11-02 15:20:26,123] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF:
[testng] [2024-11-02 15:20:28,256] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm:
[testng] [2024-11-02 15:20:28,527] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF:
[testng] [2024-11-02 15:20:31,693] [pool-1-thread-4] Initializing /data/steve/SBIG/M81 M 40s:
[testng] [2024-11-02 15:20:33,904] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img:
[testng] [2024-11-02 15:20:36,190] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A:
[testng] [2024-11-02 15:20:36,740] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2:
[testng] [2024-11-02 15:20:37,404] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd:
[testng] [2024-11-02 15:20:37,790] [pool-1-thread-12] Initializing /data/steve/TIFF/HAFF SEM:
[testng] [2024-11-02 15:20:38,823] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC:
[testng] [2024-11-02 15:20:39,678] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF:
[testng] [2024-11-02 15:20:40,797] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF:
[testng] [2024-11-02 15:20:41,930] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2:
[testng] [2024-11-02 15:20:42,867] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2:
[testng] [2024-11-02 15:20:43,290] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Graphite:
[testng] [2024-11-02 15:20:44,304] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif:
[testng] [2024-11-02 15:20:45,282] [pool-1-thread-2] Initializing /data/steve/FITS/M51.fits:
[testng] [2024-11-02 15:20:45,343] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test:
[testng] [2024-11-02 15:20:46,221] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt):
[testng] [2024-11-02 15:20:47,622] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF:
[testng] [2024-11-02 15:20:49,324] [pool-1-thread-2] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC:
[testng] [2024-11-02 15:20:49,767] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top:
[testng] [2024-11-02 15:20:50,251] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif:
[testng] [2024-11-02 15:20:51,238] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif:
[testng] [2024-11-02 15:20:53,144] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG:
[testng] [2024-11-02 15:20:53,570] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2:
[testng] [2024-11-02 15:20:53,916] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3:
[testng] [2024-11-02 15:20:54,348] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP:
[testng] [2024-11-02 15:20:55,719] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-32.IMG:
[testng] [2024-11-02 15:20:55,983] [pool-1-thread-2] Initializing /data/steve/TIFF/ta123 stack TIFF:
[testng] [2024-11-02 15:20:56,900] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict:
[testng] [2024-11-02 15:20:57,129] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP:
[testng] [2024-11-02 15:20:57,523] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3:
[testng] [2024-11-02 15:20:57,817] [pool-1-thread-4] Initializing /data/steve/TIFF/Little owl TIFF:
[testng] [2024-11-02 15:20:58,731] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts:
[testng] [2024-11-02 15:20:58,945] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF:
[testng] [2024-11-02 15:21:00,518] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP:
[testng] [2024-11-02 15:21:01,081] [pool-1-thread-8] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX:
[testng] [2024-11-02 15:21:01,321] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr:
[testng] [2024-11-02 15:21:01,627] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.IMG:
[testng] [2024-11-02 15:21:01,882] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd:
[testng] [2024-11-02 15:21:02,168] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF:
[testng] [2024-11-02 15:21:02,946] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles:
[testng] [2024-11-02 15:21:03,796] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk:
[testng] [2024-11-02 15:21:04,195] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp:
[testng] [2024-11-02 15:21:05,748] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif:
[testng] [2024-11-02 15:21:06,682] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm:
[testng] [2024-11-02 15:21:07,826] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img:
[testng] [2024-11-02 15:21:08,820] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3:
[testng] [2024-11-02 15:21:09,211] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3:
[testng] [2024-11-02 15:21:09,444] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3:
[testng] [2024-11-02 15:21:09,641] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm:
[testng] [2024-11-02 15:21:09,996] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR:
[testng] [2024-11-02 15:21:11,186] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif:
[testng] [2024-11-02 15:21:12,041] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test:
[testng] [2024-11-02 15:21:13,146] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry):
[testng] [2024-11-02 15:21:13,673] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS:
[testng] [2024-11-02 15:21:13,987] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF:
[testng] [2024-11-02 15:21:14,994] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm:
[testng] [2024-11-02 15:21:15,471] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3:
[testng] [2024-11-02 15:21:15,597] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts:
[testng] [2024-11-02 15:21:15,685] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2:
[testng] [2024-11-02 15:21:16,185] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF:
[testng] [2024-11-02 15:21:17,746] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm:
[testng] [2024-11-02 15:21:18,056] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm:
[testng] [2024-11-02 15:21:18,654] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm:
[testng] [2024-11-02 15:21:18,971] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2:
[testng] [2024-11-02 15:21:19,639] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts:
[testng] [2024-11-02 15:21:19,788] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG:
[testng] [2024-11-02 15:21:20,293] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS:
[testng] [2024-11-02 15:21:20,987] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR:
[testng] [2024-11-02 15:21:21,506] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP:
[testng] [2024-11-02 15:21:21,857] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif:
[testng] [2024-11-02 15:21:22,904] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif:
[testng] [2024-11-02 15:21:23,876] [pool-1-thread-1] Initializing /data/steve/FITS/M104.fits:
[testng] [2024-11-02 15:21:23,997] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif:
[testng] [2024-11-02 15:21:24,804] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3:
[testng] [2024-11-02 15:21:25,309] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict:
[testng] [2024-11-02 15:21:25,675] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2:
[testng] [2024-11-02 15:21:26,424] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS:
[testng] [2024-11-02 15:21:26,906] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG:
[testng] [2024-11-02 15:21:27,530] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm:
[testng] [2024-11-02 15:21:27,971] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG:
[testng] [2024-11-02 15:21:29,301] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2:
[testng] [2024-11-02 15:21:29,804] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG:
[testng] [2024-11-02 15:21:31,025] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2:
[testng] [2024-11-02 15:21:31,813] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 H 250s Tr=5s:
[testng] [2024-11-02 15:21:33,153] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS:
[testng] [2024-11-02 15:21:33,625] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG:
[testng] [2024-11-02 15:21:34,195] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3:
[testng] [2024-11-02 15:21:34,787] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4:
[testng] [2024-11-02 15:21:35,074] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS:
[testng] [2024-11-02 15:21:35,521] [pool-1-thread-6] Initializing /data/steve/TIFF/Hough test TIFF:
[testng] [2024-11-02 15:21:36,901] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict:
[testng] [2024-11-02 15:21:37,850] [pool-1-thread-10] Initializing /data/steve/SM-Camera/Orhan + IPES rig:
[testng] [2024-11-02 15:21:39,085] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF:
[testng] [2024-11-02 15:21:40,318] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP:
[testng] [2024-11-02 15:21:40,653] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY:
[testng] [2024-11-02 15:21:40,848] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf:
[testng] [2024-11-02 15:21:41,124] [pool-1-thread-5] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT:
[testng] [2024-11-02 15:21:41,521] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP:
[testng] [2024-11-02 15:21:43,177] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2:
[testng] [2024-11-02 15:21:43,631] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2:
[testng] [2024-11-02 15:21:44,092] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS:
[testng] [2024-11-02 15:21:45,301] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM:
[testng] [2024-11-02 15:21:46,190] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict:
[testng] [2024-11-02 15:21:46,583] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG:
[testng] [2024-11-02 15:21:47,078] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR:
[testng] [2024-11-02 15:21:47,380] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP:
[testng] [2024-11-02 15:21:47,745] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd:
[testng] [2024-11-02 15:21:48,018] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top:
[testng] [2024-11-02 15:21:48,793] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm:
[testng] [2024-11-02 15:21:49,638] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk:
[testng] [2024-11-02 15:21:50,325] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif:
[testng] [2024-11-02 15:21:51,059] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr:
[testng] [2024-11-02 15:21:51,410] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk:
[testng] [2024-11-02 15:21:52,351] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP:
[testng] [2024-11-02 15:21:52,835] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 8480, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 minutes 24 seconds
Finished: SUCCESS