Started by upstream project "BIOFORMATS-test-repo" build number 243
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6512736513902015554.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38263_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 15:46:13,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 15:46:13,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 15:46:13,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:46:13,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 15:46:13,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 15:46:13,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 15:46:13,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 15:46:13,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:46:13,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 15:46:13,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 15:46:13,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 15:46:13,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 15:46:14,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 15:46:14,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 15:46:14,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 15:46:14,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 15:46:14,100 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 15:46:14,101 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 15:46:14,101 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 15:46:14,101 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 15:46:14,101 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 15:46:14,102 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 15:46:14,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-02 15:46:14,110] [main] java.version = 11.0.16
[testng] 15:46:14,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 15:46:14,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:14,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_15-46-14.log]
[testng] 15:46:14,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-02 15:46:14,156] [main] testng.directory = /data
[testng] [2024-11-02 15:46:14,157] [main] testng.configDirectory = /config
[testng] [2024-11-02 15:46:14,166] [main] testng.multiplier = 1.0
[testng] [2024-11-02 15:46:14,167] [main] testng.in-memory = false
[testng] [2024-11-02 15:46:14,167] [main] testng.allow-missing = false
[testng] [2024-11-02 15:46:14,167] [main] user.language = en
[testng] [2024-11-02 15:46:14,168] [main] user.country = ${user.country}
[testng] [2024-11-02 15:46:14,168] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-02 15:46:14,581] [main] ----------------------------------------
[testng] [2024-11-02 15:46:14,582] [main] Total files: 19
[testng] [2024-11-02 15:46:14,582] [main] Scan time: 0.413 s (21 ms/file)
[testng] [2024-11-02 15:46:14,582] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-02 15:46:30,214] [pool-1-thread-1] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] 15:46:30,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 15:46:30,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:30,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_15-46-30.log]
[testng] 15:46:30,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14ad84b - End of configuration.
[testng] [2024-11-02 15:46:31,016] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 15:46:31,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 15:46:31,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:31,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_15-46-31.log]
[testng] 15:46:31,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1ee04e - End of configuration.
[testng] [2024-11-02 15:46:31,797] [pool-1-thread-11] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 15:46:31,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 15:46:31,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:31,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_15-46-31.log]
[testng] 15:46:31,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa9bc4b - End of configuration.
[testng] [2024-11-02 15:46:32,428] [pool-1-thread-10] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 15:46:32,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 15:46:32,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:32,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_15-46-32.log]
[testng] 15:46:32,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665afd2 - End of configuration.
[testng] [2024-11-02 15:46:33,141] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW:
[testng] 15:46:33,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 15:46:33,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:33,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_15-46-33.log]
[testng] 15:46:33,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ebd0da - End of configuration.
[testng] [2024-11-02 15:46:33,884] [pool-1-thread-8] Initializing /data/samples/100R PICT0001.MRW:
[testng] 15:46:33,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 15:46:33,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:33,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_15-46-33.log]
[testng] 15:46:33,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d78af2 - End of configuration.
[testng] [2024-11-02 15:46:34,554] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 15:46:34,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 15:46:34,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:34,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_15-46-34.log]
[testng] 15:46:34,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@111f829a - End of configuration.
[testng] [2024-11-02 15:46:35,113] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 15:46:35,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 15:46:35,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:35,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_15-46-35.log]
[testng] 15:46:35,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4401d17e - End of configuration.
[testng] [2024-11-02 15:46:35,670] [pool-1-thread-5] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 15:46:35,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 15:46:35,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:35,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_15-46-35.log]
[testng] 15:46:35,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40803d0c - End of configuration.
[testng] [2024-11-02 15:46:36,254] [pool-1-thread-4] Initializing /data/samples/200R PICT0002.MRW:
[testng] 15:46:36,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 15:46:36,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:36,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_15-46-36.log]
[testng] 15:46:36,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8fc17 - End of configuration.
[testng] [2024-11-02 15:46:36,832] [pool-1-thread-3] Initializing /data/samples/400R PICT0003.MRW:
[testng] 15:46:36,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 15:46:36,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:36,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_15-46-36.log]
[testng] 15:46:36,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d8e8681 - End of configuration.
[testng] [2024-11-02 15:46:37,386] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 15:46:37,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 15:46:37,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:46:37,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_15-46-37.log]
[testng] 15:46:37,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ec7b60 - End of configuration.
[testng] [2024-11-02 15:46:47,544] [pool-1-thread-10] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-11-02 15:46:48,047] [pool-1-thread-12] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] [2024-11-02 15:46:48,503] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-11-02 15:46:48,959] [pool-1-thread-5] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2024-11-02 15:46:49,442] [pool-1-thread-2] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-11-02 15:46:49,931] [pool-1-thread-8] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] [2024-11-02 15:46:50,378] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 49 seconds
Finished: SUCCESS