Started by upstream project "BIOFORMATS-test-repo" build number 243
originally caused by:
 Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1602500044340045969.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38272_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 16:05:26,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 16:05:26,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 16:05:26,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 16:05:26,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 16:05:26,406 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 16:05:26,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 16:05:26,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 16:05:26,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 16:05:26,407 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 16:05:26,408 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 16:05:26,408 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 16:05:26,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 16:05:26,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 16:05:26,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 16:05:26,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 16:05:26,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 16:05:26,596 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 16:05:26,596 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 16:05:26,596 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 16:05:26,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 16:05:26,597 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 16:05:26,597 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 16:05:26,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-02 16:05:26,606] [main] java.version = 11.0.16
   [testng] 16:05:26,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 16:05:26,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:05:26,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_16-05-26.log]
   [testng] 16:05:26,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-02 16:05:26,653] [main] testng.directory = /data
   [testng] [2024-11-02 16:05:26,653] [main] testng.configDirectory = /config
   [testng] [2024-11-02 16:05:26,662] [main] testng.multiplier = 1.0
   [testng] [2024-11-02 16:05:26,663] [main] testng.in-memory = false
   [testng] [2024-11-02 16:05:26,664] [main] testng.allow-missing = false
   [testng] [2024-11-02 16:05:26,664] [main] user.language = en
   [testng] [2024-11-02 16:05:26,664] [main] user.country = ${user.country}
   [testng] [2024-11-02 16:05:26,664] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-02 16:05:45,472] [main] ----------------------------------------
   [testng] [2024-11-02 16:05:45,472] [main] Total files: 2539
   [testng] [2024-11-02 16:05:45,472] [main] Scan time: 18.808 s (7 ms/file)
   [testng] [2024-11-02 16:05:45,472] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-02 16:06:00,553] [pool-1-thread-1] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01: 
   [testng] 16:06:00,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 16:06:00,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:00,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_16-06-00.log]
   [testng] 16:06:00,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@611f02 - End of configuration.
   [testng] [2024-11-02 16:06:00,875] [pool-1-thread-12] Initializing /data/omar/FB03f00o1.C01: 
   [testng] 16:06:00,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 16:06:00,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:00,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_16-06-00.log]
   [testng] 16:06:00,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4d9c73 - End of configuration.
   [testng] [2024-11-02 16:06:01,077] [pool-1-thread-11] Initializing /data/samples/different-field-count/plate_B03f00d0.C01: 
   [testng] 16:06:01,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 16:06:01,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:01,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_16-06-01.log]
   [testng] 16:06:01,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1302c3 - End of configuration.
   [testng] [2024-11-02 16:06:01,303] [pool-1-thread-10] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01: 
   [testng] 16:06:01,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 16:06:01,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:01,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_16-06-01.log]
   [testng] 16:06:01,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35c25fe9 - End of configuration.
   [testng] [2024-11-02 16:06:01,579] [pool-1-thread-9] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB: 
   [testng] 16:06:01,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 16:06:01,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:01,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_16-06-01.log]
   [testng] 16:06:01,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32bc5080 - End of configuration.
   [testng] [2024-11-02 16:06:01,772] [pool-1-thread-8] Initializing /data/omar/FB03f00o2.C01: 
   [testng] 16:06:01,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 16:06:01,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:01,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_16-06-01.log]
   [testng] 16:06:01,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67a4a550 - End of configuration.
   [testng] [2024-11-02 16:06:01,977] [pool-1-thread-7] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01: 
   [testng] 16:06:01,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 16:06:01,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:01,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_16-06-01.log]
   [testng] 16:06:01,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18855e3f - End of configuration.
   [testng] [2024-11-02 16:06:02,201] [pool-1-thread-6] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01: 
   [testng] 16:06:02,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 16:06:02,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:02,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_16-06-02.log]
   [testng] 16:06:02,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79caa6f3 - End of configuration.
   [testng] [2024-11-02 16:06:02,436] [pool-1-thread-5] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01: 
   [testng] 16:06:02,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 16:06:02,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:02,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_16-06-02.log]
   [testng] 16:06:02,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63b27e45 - End of configuration.
   [testng] [2024-11-02 16:06:02,769] [pool-1-thread-4] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB: 
   [testng] 16:06:02,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 16:06:02,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:02,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_16-06-02.log]
   [testng] 16:06:02,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e25a766 - End of configuration.
   [testng] [2024-11-02 16:06:02,985] [pool-1-thread-3] Initializing /data/omar/FB03f00d1.C01: 
   [testng] 16:06:02,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 16:06:02,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:02,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_16-06-02.log]
   [testng] 16:06:02,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a86ef83 - End of configuration.
   [testng] [2024-11-02 16:06:03,274] [pool-1-thread-2] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01: 
   [testng] 16:06:03,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 16:06:03,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 16:06:03,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_16-06-03.log]
   [testng] 16:06:03,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19db13c8 - End of configuration.
   [testng] [2024-11-02 16:06:06,181] [pool-1-thread-4] Initializing /data/omar/FB03f00d0.C01: 
   [testng] [2024-11-02 16:06:08,009] [pool-1-thread-2] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB: 
   [testng] [2024-11-02 16:06:08,421] [pool-1-thread-7] Initializing /data/omar/FB03f03o2.DIB: 
   [testng] [2024-11-02 16:06:08,647] [pool-1-thread-8] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01: 
   [testng] [2024-11-02 16:06:08,905] [pool-1-thread-12] Initializing /data/samples/plate-size/plate_B03f00d0.C01: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 19 minutes 13 seconds
Finished: SUCCESS