Started by upstream project "BIOFORMATS-test-repo" build number 243
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16272920030555868646.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38326_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 17:41:14,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 17:41:14,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 17:41:14,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 17:41:14,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 17:41:14,048 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 17:41:14,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 17:41:14,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 17:41:14,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 17:41:14,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 17:41:14,050 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 17:41:14,050 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 17:41:14,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 17:41:14,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 17:41:14,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 17:41:14,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 17:41:14,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 17:41:14,248 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 17:41:14,248 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 17:41:14,248 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 17:41:14,248 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 17:41:14,248 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 17:41:14,249 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 17:41:14,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-02 17:41:14,258] [main] java.version = 11.0.16
[testng] 17:41:14,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 17:41:14,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:14,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_17-41-14.log]
[testng] 17:41:14,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-02 17:41:14,306] [main] testng.directory = /data
[testng] [2024-11-02 17:41:14,306] [main] testng.configDirectory = /config
[testng] [2024-11-02 17:41:14,315] [main] testng.multiplier = 1.0
[testng] [2024-11-02 17:41:14,317] [main] testng.in-memory = false
[testng] [2024-11-02 17:41:14,317] [main] testng.allow-missing = false
[testng] [2024-11-02 17:41:14,317] [main] user.language = en
[testng] [2024-11-02 17:41:14,317] [main] user.country = ${user.country}
[testng] [2024-11-02 17:41:14,317] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-02 17:41:17,830] [main] ----------------------------------------
[testng] [2024-11-02 17:41:17,830] [main] Total files: 22
[testng] [2024-11-02 17:41:17,830] [main] Scan time: 3.513 s (159 ms/file)
[testng] [2024-11-02 17:41:17,830] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-02 17:41:33,234] [pool-1-thread-1] Initializing /data/converted/clown8c.tif:
[testng] 17:41:33,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 17:41:33,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:33,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_17-41-33.log]
[testng] 17:41:33,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f50bac2 - End of configuration.
[testng] [2024-11-02 17:41:34,042] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips:
[testng] 17:41:34,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 17:41:34,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:34,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_17-41-34.log]
[testng] 17:41:34,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eccac63 - End of configuration.
[testng] [2024-11-02 17:41:34,383] [pool-1-thread-11] Initializing /data/converted/clown8c.ipw:
[testng] 17:41:34,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 17:41:34,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:34,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_17-41-34.log]
[testng] 17:41:34,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e77f532 - End of configuration.
[testng] [2024-11-02 17:41:34,712] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 17:41:34,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 17:41:34,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:34,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_17-41-34.log]
[testng] 17:41:34,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@176b6f5e - End of configuration.
[testng] [2024-11-02 17:41:35,053] [pool-1-thread-9] Initializing /data/converted/mitosis-test.tif:
[testng] 17:41:35,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 17:41:35,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:35,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_17-41-35.log]
[testng] 17:41:35,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61739d02 - End of configuration.
[testng] [2024-11-02 17:41:36,006] [pool-1-thread-8] Initializing /data/converted/dub01.pic:
[testng] 17:41:36,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 17:41:36,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:36,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_17-41-36.log]
[testng] 17:41:36,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77e243ac - End of configuration.
[testng] [2024-11-02 17:41:36,311] [pool-1-thread-7] Initializing /data/converted/dub01.ipw:
[testng] 17:41:36,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 17:41:36,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:36,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_17-41-36.log]
[testng] 17:41:36,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@358869f5 - End of configuration.
[testng] [2024-11-02 17:41:36,641] [pool-1-thread-6] Initializing /data/converted/clown.ipw:
[testng] 17:41:36,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 17:41:36,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:36,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_17-41-36.log]
[testng] 17:41:36,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79869d92 - End of configuration.
[testng] [2024-11-02 17:41:36,953] [pool-1-thread-5] Initializing /data/samples/PROBE.TIF:
[testng] 17:41:36,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 17:41:36,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:36,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_17-41-36.log]
[testng] 17:41:36,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36f276ed - End of configuration.
[testng] [2024-11-02 17:41:37,311] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq:
[testng] 17:41:37,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 17:41:37,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:37,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_17-41-37.log]
[testng] 17:41:37,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60cb4eda - End of configuration.
[testng] [2024-11-02 17:41:37,650] [pool-1-thread-3] Initializing /data/samples/TISSUE.TIF:
[testng] 17:41:37,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 17:41:37,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:37,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_17-41-37.log]
[testng] 17:41:37,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eae2cd8 - End of configuration.
[testng] [2024-11-02 17:41:38,456] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ:
[testng] 17:41:38,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 17:41:38,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:41:38,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_17-41-38.log]
[testng] 17:41:38,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3324e708 - End of configuration.
[testng] [2024-11-02 17:41:42,804] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-11-02 17:41:43,632] [pool-1-thread-6] Initializing /data/samples/FLDUAL.TIF:
[testng] [2024-11-02 17:41:44,488] [pool-1-thread-5] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] [2024-11-02 17:41:44,811] [pool-1-thread-4] Initializing /data/converted/dub01.seq:
[testng] [2024-11-02 17:41:45,157] [pool-1-thread-2] Initializing /data/converted/clown8c.seq:
[testng] [2024-11-02 17:41:45,565] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq:
[testng] [2024-11-02 17:41:45,995] [pool-1-thread-10] Initializing /data/converted/clown.tif:
[testng] [2024-11-02 17:41:46,385] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw:
[testng] [2024-11-02 17:41:47,731] [pool-1-thread-3] Initializing /data/converted/clown.seq:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 12 seconds
Finished: SUCCESS