Started by upstream project "BIOFORMATS-test-repo" build number 29
originally caused by:
Started by upstream project "Trigger" build number 32
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2385263961989346425.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3839_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:02:54,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:02:54,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:02:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:02:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:02:54,416 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:02:54,416 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:02:54,416 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:02:54,417 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:02:54,417 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration.
[testng] 02:02:54,418 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point
[testng] 02:02:54,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 424 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-10 02:02:54,435] [main] java.version = 17.0.2
[testng] 02:02:54,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:02:54,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:54,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-10_02-02-54.log]
[testng] 02:02:54,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-10 02:02:54,534] [main] testng.directory = /data
[testng] [2024-04-10 02:02:54,535] [main] testng.configDirectory = /config
[testng] [2024-04-10 02:02:54,547] [main] testng.multiplier = 1.0
[testng] [2024-04-10 02:02:54,548] [main] testng.in-memory = false
[testng] [2024-04-10 02:02:54,548] [main] testng.allow-missing = false
[testng] [2024-04-10 02:02:54,548] [main] user.language = en
[testng] [2024-04-10 02:02:54,548] [main] user.country = ${user.country}
[testng] [2024-04-10 02:02:54,548] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-10 02:02:55,031] [main] ----------------------------------------
[testng] [2024-04-10 02:02:55,031] [main] Total files: 19
[testng] [2024-04-10 02:02:55,032] [main] Scan time: 0.482 s (25 ms/file)
[testng] [2024-04-10 02:02:55,032] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-10 02:02:56,930] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:02:56,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:02:56,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:56,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-10_02-02-56.log]
[testng] 02:02:56,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@156450f8 - End of configuration.
[testng] [2024-04-10 02:02:56,973] [pool-1-thread-12] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:02:56,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:02:56,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:56,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-10_02-02-56.log]
[testng] 02:02:56,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72adcbcc - End of configuration.
[testng] [2024-04-10 02:02:57,083] [pool-1-thread-11] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:02:57,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:02:57,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-10_02-02-57.log]
[testng] 02:02:57,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dfa5de1 - End of configuration.
[testng] [2024-04-10 02:02:57,127] [pool-1-thread-10] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] 02:02:57,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:02:57,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-10_02-02-57.log]
[testng] 02:02:57,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b053870 - End of configuration.
[testng] [2024-04-10 02:02:57,160] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 02:02:57,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:02:57,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-10_02-02-57.log]
[testng] 02:02:57,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ac7ccde - End of configuration.
[testng] [2024-04-10 02:02:57,250] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] 02:02:57,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:02:57,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-10_02-02-57.log]
[testng] 02:02:57,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration.
[testng] [2024-04-10 02:02:57,292] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] 02:02:57,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:02:57,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-10_02-02-57.log]
[testng] 02:02:57,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5050a326 - End of configuration.
[testng] [2024-04-10 02:02:57,350] [pool-1-thread-6] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:02:57,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:02:57,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-10_02-02-57.log]
[testng] 02:02:57,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6111b044 - End of configuration.
[testng] [2024-04-10 02:02:57,416] [pool-1-thread-5] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:02:57,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:02:57,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-10_02-02-57.log]
[testng] 02:02:57,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d7f9de - End of configuration.
[testng] [2024-04-10 02:02:57,471] [pool-1-thread-4] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:02:57,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:02:57,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-10_02-02-57.log]
[testng] 02:02:57,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@570fad82 - End of configuration.
[testng] [2024-04-10 02:02:57,535] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW:
[testng] 02:02:57,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:02:57,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-10_02-02-57.log]
[testng] 02:02:57,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36f93339 - End of configuration.
[testng] [2024-04-10 02:02:57,609] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:02:57,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:02:57,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:02:57,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-10_02-02-57.log]
[testng] 02:02:57,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35ea13b4 - End of configuration.
[testng] [2024-04-10 02:03:04,253] [pool-1-thread-2] Initializing /data/samples/100R PICT0001.MRW:
[testng] [2024-04-10 02:03:04,295] [pool-1-thread-12] Initializing /data/samples/200R PICT0002.MRW:
[testng] [2024-04-10 02:03:04,333] [pool-1-thread-11] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] [2024-04-10 02:03:04,369] [pool-1-thread-8] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2024-04-10 02:03:04,402] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] [2024-04-10 02:03:04,496] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-04-10 02:03:04,527] [pool-1-thread-10] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 21 seconds
Finished: SUCCESS