Started by upstream project "BIOFORMATS-test-repo" build number 244
originally caused by:
Started by upstream project "Trigger" build number 268
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins2291215189081797280.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38488_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 03:52:59,783 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:52:59,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 03:52:59,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:52:59,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:52:59,786 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:52:59,786 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:52:59,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:52:59,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:52:59,787 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:52:59,787 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:52:59,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:52:59,788 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:52:59,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:52:59,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:52:59,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:52:59,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:52:59,981 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:52:59,982 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:52:59,982 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:52:59,982 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:52:59,982 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 03:52:59,983 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 03:52:59,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-03 03:52:59,992] [main] java.version = 17.0.2
[testng] 03:52:59,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:52:59,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:00,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_03-53-00.log]
[testng] 03:53:00,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-03 03:53:00,040] [main] testng.directory = /data
[testng] [2024-11-03 03:53:00,041] [main] testng.configDirectory = /config
[testng] [2024-11-03 03:53:00,049] [main] testng.multiplier = 1.0
[testng] [2024-11-03 03:53:00,050] [main] testng.in-memory = false
[testng] [2024-11-03 03:53:00,051] [main] testng.allow-missing = false
[testng] [2024-11-03 03:53:00,051] [main] user.language = en
[testng] [2024-11-03 03:53:00,051] [main] user.country = ${user.country}
[testng] [2024-11-03 03:53:00,051] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-03 03:53:13,353] [main] ----------------------------------------
[testng] [2024-11-03 03:53:13,354] [main] Total files: 31
[testng] [2024-11-03 03:53:13,354] [main] Scan time: 13.302 s (429 ms/file)
[testng] [2024-11-03 03:53:13,354] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 30 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-03 03:53:29,906] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff:
[testng] 03:53:29,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:53:29,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:29,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-03_03-53-29.log]
[testng] 03:53:29,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e7466de - End of configuration.
[testng] [2024-11-03 03:53:31,196] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2:
[testng] 03:53:31,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:53:31,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:31,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-03_03-53-31.log]
[testng] 03:53:31,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1abede62 - End of configuration.
[testng] [2024-11-03 03:53:31,602] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2:
[testng] 03:53:31,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:53:31,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:31,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-03_03-53-31.log]
[testng] 03:53:31,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@520dad48 - End of configuration.
[testng] [2024-11-03 03:53:32,069] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2:
[testng] 03:53:32,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:53:32,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:32,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-03_03-53-32.log]
[testng] 03:53:32,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e6a04d - End of configuration.
[testng] [2024-11-03 03:53:32,431] [pool-1-thread-9] Initializing /data/vikram/Captured 3.jp2:
[testng] 03:53:32,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:53:32,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:32,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-03_03-53-32.log]
[testng] 03:53:32,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140cedc1 - End of configuration.
[testng] [2024-11-03 03:53:32,811] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2:
[testng] 03:53:32,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:53:32,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:32,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-03_03-53-32.log]
[testng] 03:53:32,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@455827b1 - End of configuration.
[testng] [2024-11-03 03:53:33,161] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2:
[testng] 03:53:33,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:53:33,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:33,161 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-03_03-53-33.log]
[testng] 03:53:33,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31cee426 - End of configuration.
[testng] [2024-11-03 03:53:33,512] [pool-1-thread-6] Initializing /data/big-images/2kx2k.jpf:
[testng] 03:53:33,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:53:33,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:33,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-03_03-53-33.log]
[testng] 03:53:33,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@582e7b1e - End of configuration.
[testng] [2024-11-03 03:53:33,928] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2:
[testng] 03:53:33,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:53:33,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:33,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-03_03-53-33.log]
[testng] 03:53:33,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2704605 - End of configuration.
[testng] [2024-11-03 03:53:34,571] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.tiff:
[testng] 03:53:34,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:53:34,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:34,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-03_03-53-34.log]
[testng] 03:53:34,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ade598c - End of configuration.
[testng] [2024-11-03 03:53:35,714] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2:
[testng] 03:53:35,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:53:35,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:35,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-03_03-53-35.log]
[testng] 03:53:35,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55de1ef8 - End of configuration.
[testng] [2024-11-03 03:53:36,111] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2:
[testng] 03:53:36,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:53:36,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:53:36,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-03_03-53-36.log]
[testng] 03:53:36,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a0155d7 - End of configuration.
[testng] [2024-11-03 03:53:40,627] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2:
[testng] [2024-11-03 03:53:41,050] [pool-1-thread-9] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx:
[testng] [2024-11-03 03:53:43,090] [pool-1-thread-1] Initializing /data/aryeh/flour 12.jp2:
[testng] [2024-11-03 03:53:44,583] [pool-1-thread-8] Initializing /data/david/multichannel-2d test.jp2:
[testng] [2024-11-03 03:53:45,041] [pool-1-thread-4] Initializing /data/big-images/8kx8k.jpf:
[testng] [2024-11-03 03:53:45,380] [pool-1-thread-10] Initializing /data/kraig/head.jp2:
[testng] [2024-11-03 03:53:46,086] [pool-1-thread-12] Initializing /data/frans/flower.jp2:
[testng] [2024-11-03 03:53:48,742] [pool-1-thread-1] Initializing /data/vikram/Captured 1.jp2:
[testng] [2024-11-03 03:53:49,177] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf:
[testng] [2024-11-03 03:53:50,225] [pool-1-thread-10] Initializing /data/venu/Multichannel 3a.jpg:
[testng] [2024-11-03 03:53:52,221] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2:
[testng] [2024-11-03 03:53:52,976] [pool-1-thread-11] Initializing /data/david/000000_000001.jpx:
[testng] [2024-11-03 03:53:53,485] [pool-1-thread-3] Initializing /data/david/multichannel-3d-MBF-type.jpx:
[testng] [2024-11-03 03:53:54,385] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jbig:
[testng] [2024-11-03 03:53:55,430] [pool-1-thread-1] Initializing /data/vikram/Captured 4.jp2:
[testng] [2024-11-03 03:53:56,336] [pool-1-thread-10] Initializing /data/vikram/Captured 5.jp2:
[testng] [2024-11-03 03:53:59,634] [pool-1-thread-1] Initializing /data/david/multichannel-2d test-non MBF-type.jp2:
[testng] [2024-11-03 03:54:00,638] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jpc:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1590, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 minutes 56 seconds
Finished: SUCCESS