Started by upstream project "BIOFORMATS-test-repo" build number 245 originally caused by: Started by upstream project "Trigger" build number 269 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8468694809777941547.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_38512_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:25:13,706 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:25:13,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:25:13,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:25:13,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:25:13,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:25:13,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:25:13,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:25:13,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:25:13,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:25:13,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:25:13,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:25:13,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:25:13,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:25:13,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:25:13,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:25:13,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:25:13,986 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:25:13,987 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:25:13,987 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:25:13,987 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:25:13,987 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:25:13,988 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:25:13,988 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-04 00:25:13,998] [main] java.version = 1.8.0_342 [testng] 00:25:14,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:25:14,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:14,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-04_00-25-14.log] [testng] 00:25:14,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-04 00:25:14,050] [main] testng.directory = /data [testng] [2024-11-04 00:25:14,050] [main] testng.configDirectory = /config [testng] [2024-11-04 00:25:14,062] [main] testng.multiplier = 1.0 [testng] [2024-11-04 00:25:14,062] [main] testng.in-memory = false [testng] [2024-11-04 00:25:14,063] [main] testng.allow-missing = false [testng] [2024-11-04 00:25:14,063] [main] user.language = fr [testng] [2024-11-04 00:25:14,063] [main] user.country = FR [testng] [2024-11-04 00:25:14,063] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-04 00:27:14,380] [main] ---------------------------------------- [testng] [2024-11-04 00:27:14,380] [main] Total files: 21 [testng] [2024-11-04 00:27:14,380] [main] Scan time: 120.317 s (5729 ms/file) [testng] [2024-11-04 00:27:14,380] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-04 00:30:08,851] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 00:30:08,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:08,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:08,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-04_00-30-08.log] [testng] 00:30:08,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4218f73d - End of configuration. [testng] [2024-11-04 00:30:17,241] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 00:30:17,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:17,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:17,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-04_00-30-17.log] [testng] 00:30:17,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@580a8b3e - End of configuration. [testng] [2024-11-04 00:30:26,220] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt: [testng] 00:30:26,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:26,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:26,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-04_00-30-26.log] [testng] 00:30:26,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@399cfffb - End of configuration. [testng] [2024-11-04 00:30:39,056] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt: [testng] 00:30:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:39,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-04_00-30-39.log] [testng] 00:30:39,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b5f30e3 - End of configuration. [testng] [2024-11-04 00:30:54,327] [pool-1-thread-9] Initializing /data/stefan/001_q04.txt: [testng] 00:30:54,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:54,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:54,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-04_00-30-54.log] [testng] 00:30:54,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43dc4a70 - End of configuration. [testng] [2024-11-04 00:31:07,392] [pool-1-thread-8] Initializing /data/stefan/001_q09.txt: [testng] 00:31:07,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:31:07,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:07,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-04_00-31-07.log] [testng] 00:31:07,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f242afd - End of configuration. [testng] [2024-11-04 00:31:24,906] [pool-1-thread-7] Initializing /data/stefan/001_q06.txt: [testng] 00:31:24,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:31:24,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:24,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-04_00-31-24.log] [testng] 00:31:24,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331c5a25 - End of configuration. [testng] [2024-11-04 00:31:30,599] [pool-1-thread-6] Initializing /data/stefan/001_q01.txt: [testng] 00:31:30,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:31:30,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:30,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-04_00-31-30.log] [testng] 00:31:30,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16aa547e - End of configuration. [testng] [2024-11-04 00:31:35,090] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 00:31:35,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:31:35,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:35,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-04_00-31-35.log] [testng] 00:31:35,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@478b29ef - End of configuration. [testng] [2024-11-04 00:31:41,181] [pool-1-thread-4] Initializing /data/stefan/001_q10.txt: [testng] 00:31:41,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:31:41,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:41,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-04_00-31-41.log] [testng] 00:31:41,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@507ce34f - End of configuration. [testng] [2024-11-04 00:31:52,105] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt: [testng] 00:31:52,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:31:52,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:52,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-04_00-31-52.log] [testng] 00:31:52,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56d7ebce - End of configuration. [testng] [2024-11-04 00:31:55,214] [pool-1-thread-2] Initializing /data/stefan/001_q16.txt: [testng] 00:31:55,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:31:55,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:55,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-04_00-31-55.log] [testng] 00:31:55,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@235d3531 - End of configuration. [testng] [2024-11-04 00:33:24,174] [pool-1-thread-9] Initializing /data/stefan/001_q02.txt: [testng] [2024-11-04 00:33:32,353] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt: [testng] [2024-11-04 00:33:43,024] [pool-1-thread-7] Initializing /data/stefan/001_q05.txt: [testng] [2024-11-04 00:33:47,297] [pool-1-thread-3] Initializing /data/stefan/001_q03.txt: [testng] [2024-11-04 00:33:50,710] [pool-1-thread-5] Initializing /data/stefan/001_q08.txt: [testng] [2024-11-04 00:33:58,475] [pool-1-thread-11] Initializing /data/stefan/001_q07.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 minutes 24 seconds Finished: SUCCESS