Started by upstream project "BIOFORMATS-test-repo" build number 245
originally caused by:
Started by upstream project "Trigger" build number 269
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7798908900470021062.sh
+ '[' amira = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38520_merge_ci -v /uod/idr/repos/curated/amira:/data -v /uod/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:39:46,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:39:46,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:39:46,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:39:46,438 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:39:46,439 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:39:46,439 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:39:46,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:39:46,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:39:46,440 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:39:46,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:39:46,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:39:46,440 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:39:46,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:39:46,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:39:46,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:39:46,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:39:46,711 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:39:46,711 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:39:46,712 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:39:46,712 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:39:46,712 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:39:46,713 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:39:46,713 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-04 00:39:46,723] [main] java.version = 1.8.0_342
[testng] 00:39:46,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:39:46,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:46,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-04_00-39-46.log]
[testng] 00:39:46,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-04 00:39:46,775] [main] testng.directory = /data
[testng] [2024-11-04 00:39:46,775] [main] testng.configDirectory = /config
[testng] [2024-11-04 00:39:46,787] [main] testng.multiplier = 1.0
[testng] [2024-11-04 00:39:46,787] [main] testng.in-memory = false
[testng] [2024-11-04 00:39:46,787] [main] testng.allow-missing = false
[testng] [2024-11-04 00:39:46,787] [main] user.language = fr
[testng] [2024-11-04 00:39:46,788] [main] user.country = FR
[testng] [2024-11-04 00:39:46,788] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-04 00:40:00,643] [main] ----------------------------------------
[testng] [2024-11-04 00:40:00,643] [main] Total files: 15
[testng] [2024-11-04 00:40:00,643] [main] Scan time: 13.855 s (923 ms/file)
[testng] [2024-11-04 00:40:00,643] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-04 00:40:35,131] [pool-1-thread-1] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am:
[testng] 00:40:35,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:40:35,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:35,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-04_00-40-35.log]
[testng] 00:40:35,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b920ab6 - End of configuration.
[testng] [2024-11-04 00:40:35,563] [pool-1-thread-12] Initializing /data/samples/emptykey/test.am:
[testng] 00:40:35,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:40:35,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:35,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-04_00-40-35.log]
[testng] 00:40:35,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20dfb90a - End of configuration.
[testng] [2024-11-04 00:40:35,996] [pool-1-thread-11] Initializing /data/public/imagesc-50585/BF_CheckMIB.am:
[testng] 00:40:35,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:40:35,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:35,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-04_00-40-35.log]
[testng] 00:40:35,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6346a074 - End of configuration.
[testng] [2024-11-04 00:40:36,862] [pool-1-thread-10] Initializing /data/public/imagesc-50585/BF_CheckAmira.am:
[testng] 00:40:36,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:40:36,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:36,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-04_00-40-36.log]
[testng] 00:40:36,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753d834f - End of configuration.
[testng] [2024-11-04 00:40:38,119] [pool-1-thread-9] Initializing /data/ilya/test.am:
[testng] 00:40:38,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:40:38,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:38,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-04_00-40-38.log]
[testng] 00:40:38,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59c19573 - End of configuration.
[testng] [2024-11-04 00:40:40,195] [pool-1-thread-8] Initializing /data/public/imagesc-50585/BF_Check.tif:
[testng] 00:40:40,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:40:40,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:40,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-04_00-40-40.log]
[testng] 00:40:40,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23793eae - End of configuration.
[testng] [2024-11-04 00:40:44,792] [pool-1-thread-7] Initializing /data/johannes/template.labels:
[testng] 00:40:44,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:40:44,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:44,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-04_00-40-44.log]
[testng] 00:40:44,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f67549 - End of configuration.
[testng] [2024-11-04 00:40:45,510] [pool-1-thread-6] Initializing /data/johannes/template.grey:
[testng] 00:40:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:40:45,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:45,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-04_00-40-45.log]
[testng] 00:40:45,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@278f2aea - End of configuration.
[testng] [2024-11-04 00:40:46,283] [pool-1-thread-5] Initializing /data/jeremy/Hiv_spikes.am:
[testng] 00:40:46,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:40:46,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:46,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-04_00-40-46.log]
[testng] 00:40:46,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b098f95 - End of configuration.
[testng] [2024-11-04 00:40:47,930] [pool-1-thread-4] Initializing /data/jeremy/Virus_Membrane7.am:
[testng] 00:40:47,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:40:47,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:47,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-04_00-40-47.log]
[testng] 00:40:47,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2934a53 - End of configuration.
[testng] [2024-11-04 00:40:49,934] [pool-1-thread-3] Initializing /data/public/ignacio/test.am:
[testng] 00:40:49,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:40:49,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:49,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-04_00-40-49.log]
[testng] 00:40:49,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f23b84f - End of configuration.
[testng] [2024-11-04 00:40:51,499] [pool-1-thread-2] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG:
[testng] 00:40:51,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:40:51,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:51,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-04_00-40-51.log]
[testng] 00:40:51,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d125efb - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 34 seconds
Finished: SUCCESS