Started by upstream project "BIOFORMATS-test-repo" build number 245 originally caused by: Started by upstream project "Trigger" build number 269 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins2237819781859496116.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_38523_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:49:34,076 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:49:34,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:49:34,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:34,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:34,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:49:34,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:49:34,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:49:34,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:34,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:34,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:49:34,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:49:34,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:49:34,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:49:34,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:49:34,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:49:34,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:49:34,340 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:49:34,340 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:49:34,340 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:49:34,341 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:49:34,341 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:49:34,342 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:49:34,342 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 262 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-04 00:49:34,351] [main] java.version = 1.8.0_342 [testng] 00:49:34,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:49:34,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:34,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-04_00-49-34.log] [testng] 00:49:34,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-04 00:49:34,403] [main] testng.directory = /data [testng] [2024-11-04 00:49:34,403] [main] testng.configDirectory = /config [testng] [2024-11-04 00:49:34,415] [main] testng.multiplier = 1.0 [testng] [2024-11-04 00:49:34,415] [main] testng.in-memory = false [testng] [2024-11-04 00:49:34,415] [main] testng.allow-missing = false [testng] [2024-11-04 00:49:34,415] [main] user.language = fr [testng] [2024-11-04 00:49:34,415] [main] user.country = FR [testng] [2024-11-04 00:49:34,416] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-04 01:08:21,368] [main] ---------------------------------------- [testng] [2024-11-04 01:08:21,368] [main] Total files: 226 [testng] [2024-11-04 01:08:21,368] [main] Scan time: 1126.952 s (4986 ms/file) [testng] [2024-11-04 01:08:21,369] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-04 01:31:19,473] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:31:19,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:31:19,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:19,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-04_01-31-19.log] [testng] 01:31:19,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bd5a5c8 - End of configuration. [testng] [2024-11-04 01:31:20,305] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 01:31:20,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:31:20,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:20,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-04_01-31-20.log] [testng] 01:31:20,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f8cbe25 - End of configuration. [testng] [2024-11-04 01:31:25,532] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:31:25,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:31:25,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:25,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-04_01-31-25.log] [testng] 01:31:25,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67fd4db3 - End of configuration. [testng] [2024-11-04 01:31:31,082] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 01:31:31,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:31:31,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:31,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-04_01-31-31.log] [testng] 01:31:31,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa098ef - End of configuration. [testng] [2024-11-04 01:31:32,231] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:31:32,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:31:32,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:32,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-04_01-31-32.log] [testng] 01:31:32,233 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3299781a - End of configuration. [testng] [2024-11-04 01:31:38,951] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:31:38,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:31:38,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:38,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-04_01-31-38.log] [testng] 01:31:38,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e715e2f - End of configuration. [testng] [2024-11-04 01:31:45,111] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL: [testng] 01:31:45,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:31:45,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:45,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-04_01-31-45.log] [testng] 01:31:45,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f99ffa4 - End of configuration. [testng] [2024-11-04 01:31:45,992] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:31:45,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:31:45,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:45,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-04_01-31-45.log] [testng] 01:31:45,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4564587d - End of configuration. [testng] [2024-11-04 01:31:51,635] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 01:31:51,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:31:51,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:51,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-04_01-31-51.log] [testng] 01:31:51,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ba38109 - End of configuration. [testng] [2024-11-04 01:31:52,549] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 01:31:52,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:31:52,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:52,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-04_01-31-52.log] [testng] 01:31:52,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45aefea2 - End of configuration. [testng] [2024-11-04 01:31:52,899] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 01:31:52,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:31:52,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:52,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-04_01-31-52.log] [testng] 01:31:52,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a1127b - End of configuration. [testng] [2024-11-04 01:31:57,212] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:31:57,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:31:57,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:57,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-04_01-31-57.log] [testng] 01:31:57,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b8cdddc - End of configuration. [testng] [2024-11-04 01:32:13,290] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-11-04 01:32:16,879] [pool-1-thread-1] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-11-04 01:32:22,161] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-11-04 01:32:27,751] [pool-1-thread-10] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-11-04 01:32:28,396] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-11-04 01:32:39,947] [pool-1-thread-10] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-11-04 01:32:42,414] [pool-1-thread-5] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-11-04 01:32:47,032] [pool-1-thread-8] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-11-04 01:32:48,074] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-11-04 01:32:48,770] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-11-04 01:32:51,744] [pool-1-thread-3] Initializing /data/iplab/Actin.IPL: [testng] [2024-11-04 01:32:52,180] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-11-04 01:32:55,179] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-11-04 01:32:58,487] [pool-1-thread-5] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-11-04 01:32:59,587] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] [2024-11-04 01:33:00,332] [pool-1-thread-1] Initializing /data/iplab/16Bit XRay.IPL: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 43 minutes 47 seconds Finished: SUCCESS