Started by upstream project "BIOFORMATS-test-repo" build number 246
originally caused by:
Started by upstream project "Trigger" build number 270
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1500389090022335036.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38732_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:13:34,914 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:13:34,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:13:34,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:13:34,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:13:34,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:13:34,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:13:34,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:13:34,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:13:34,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:13:34,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:13:34,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:13:34,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:13:35,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:13:35,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:13:35,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:13:35,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:13:35,159 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:13:35,159 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:13:35,159 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:13:35,160 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:13:35,160 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:13:35,161 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:13:35,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-05 01:13:35,171] [main] java.version = 11.0.16
[testng] 01:13:35,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:13:35,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:35,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-05_01-13-35.log]
[testng] 01:13:35,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-05 01:13:35,224] [main] testng.directory = /data
[testng] [2024-11-05 01:13:35,225] [main] testng.configDirectory = /config
[testng] [2024-11-05 01:13:35,237] [main] testng.multiplier = 1.0
[testng] [2024-11-05 01:13:35,238] [main] testng.in-memory = false
[testng] [2024-11-05 01:13:35,238] [main] testng.allow-missing = false
[testng] [2024-11-05 01:13:35,238] [main] user.language = en
[testng] [2024-11-05 01:13:35,238] [main] user.country = ${user.country}
[testng] [2024-11-05 01:13:35,239] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-05 01:13:35,904] [main] ----------------------------------------
[testng] [2024-11-05 01:13:35,904] [main] Total files: 15
[testng] [2024-11-05 01:13:35,904] [main] Scan time: 0.665 s (44 ms/file)
[testng] [2024-11-05 01:13:35,905] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-05 01:13:49,536] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc:
[testng] 01:13:49,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:13:49,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:49,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-05_01-13-49.log]
[testng] 01:13:49,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f9937d9 - End of configuration.
[testng] [2024-11-05 01:13:49,924] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc:
[testng] 01:13:49,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:13:49,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:49,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-05_01-13-49.log]
[testng] 01:13:49,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c15baa - End of configuration.
[testng] [2024-11-05 01:13:50,348] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc:
[testng] 01:13:50,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:13:50,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:50,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-05_01-13-50.log]
[testng] 01:13:50,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@750bae44 - End of configuration.
[testng] [2024-11-05 01:13:50,804] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc:
[testng] 01:13:50,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:13:50,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:50,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-05_01-13-50.log]
[testng] 01:13:50,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ba87f98 - End of configuration.
[testng] [2024-11-05 01:13:51,176] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc:
[testng] 01:13:51,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:13:51,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:51,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-05_01-13-51.log]
[testng] 01:13:51,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46c88390 - End of configuration.
[testng] [2024-11-05 01:13:51,525] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc:
[testng] 01:13:51,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:13:51,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:51,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-05_01-13-51.log]
[testng] 01:13:51,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@297d77e0 - End of configuration.
[testng] [2024-11-05 01:13:51,920] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc:
[testng] 01:13:51,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:13:51,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:51,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-05_01-13-51.log]
[testng] 01:13:51,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3076718a - End of configuration.
[testng] [2024-11-05 01:13:52,286] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc:
[testng] 01:13:52,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:13:52,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:52,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-05_01-13-52.log]
[testng] 01:13:52,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eae5818 - End of configuration.
[testng] [2024-11-05 01:13:52,646] [pool-1-thread-5] Initializing /data/bigbrain/pm6479o.mnc:
[testng] 01:13:52,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:13:52,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:52,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-05_01-13-52.log]
[testng] 01:13:52,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42195738 - End of configuration.
[testng] [2024-11-05 01:13:53,499] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc:
[testng] 01:13:53,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:13:53,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:53,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-05_01-13-53.log]
[testng] 01:13:53,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b495afd - End of configuration.
[testng] [2024-11-05 01:13:53,815] [pool-1-thread-3] Initializing /data/qa-17215/IBSR01.mnc:
[testng] 01:13:53,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:13:53,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:53,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-05_01-13-53.log]
[testng] 01:13:53,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20a4c6ab - End of configuration.
[testng] [2024-11-05 01:13:54,242] [pool-1-thread-2] Initializing /data/samples/N3/average_305_mask_1mm.mnc:
[testng] 01:13:54,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:13:54,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:13:54,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-05_01-13-54.log]
[testng] 01:13:54,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c1e276b - End of configuration.
BUILD SUCCESSFUL
Total time: 57 seconds
Finished: SUCCESS