Started by upstream project "BIOFORMATS-test-repo" build number 247
originally caused by:
Started by upstream project "Trigger" build number 271
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8893189297605906159.sh
+ '[' targa = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38862_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:40:33,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:40:33,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:40:33,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:40:33,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:40:33,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:40:33,907 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:40:33,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:40:33,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:40:33,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:40:33,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:40:33,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:40:33,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:40:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:40:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:40:34,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:40:34,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:40:34,151 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:40:34,151 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:40:34,151 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:40:34,152 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:40:34,152 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:40:34,153 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:40:34,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-06 00:40:34,162] [main] java.version = 17.0.2
[testng] 00:40:34,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:40:34,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:34,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_00-40-34.log]
[testng] 00:40:34,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-06 00:40:34,209] [main] testng.directory = /data
[testng] [2024-11-06 00:40:34,209] [main] testng.configDirectory = /config
[testng] [2024-11-06 00:40:34,217] [main] testng.multiplier = 1.0
[testng] [2024-11-06 00:40:34,218] [main] testng.in-memory = false
[testng] [2024-11-06 00:40:34,218] [main] testng.allow-missing = false
[testng] [2024-11-06 00:40:34,218] [main] user.language = en
[testng] [2024-11-06 00:40:34,218] [main] user.country = ${user.country}
[testng] [2024-11-06 00:40:34,218] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-06 00:40:34,957] [main] ----------------------------------------
[testng] [2024-11-06 00:40:34,957] [main] Total files: 21
[testng] [2024-11-06 00:40:34,957] [main] Scan time: 0.739 s (35 ms/file)
[testng] [2024-11-06 00:40:34,957] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-06 00:40:41,214] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA:
[testng] 00:40:41,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:40:41,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:41,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_00-40-41.log]
[testng] 00:40:41,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f7923b8 - End of configuration.
[testng] [2024-11-06 00:40:41,507] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA:
[testng] 00:40:41,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:40:41,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:41,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-06_00-40-41.log]
[testng] 00:40:41,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573e7e7b - End of configuration.
[testng] [2024-11-06 00:40:41,800] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA:
[testng] 00:40:41,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:40:41,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:41,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-06_00-40-41.log]
[testng] 00:40:41,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2081a2fc - End of configuration.
[testng] [2024-11-06 00:40:42,027] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA:
[testng] 00:40:42,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:40:42,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:42,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-06_00-40-42.log]
[testng] 00:40:42,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d88b07 - End of configuration.
[testng] [2024-11-06 00:40:42,284] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA:
[testng] 00:40:42,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:40:42,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:42,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_00-40-42.log]
[testng] 00:40:42,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef384dd - End of configuration.
[testng] [2024-11-06 00:40:42,506] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA:
[testng] 00:40:42,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:40:42,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:42,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_00-40-42.log]
[testng] 00:40:42,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7655bcc9 - End of configuration.
[testng] [2024-11-06 00:40:42,747] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA:
[testng] 00:40:42,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:40:42,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:42,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_00-40-42.log]
[testng] 00:40:42,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5420d44b - End of configuration.
[testng] [2024-11-06 00:40:42,946] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA:
[testng] 00:40:42,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:40:42,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:42,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-06_00-40-42.log]
[testng] 00:40:42,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289eed7 - End of configuration.
[testng] [2024-11-06 00:40:43,106] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA:
[testng] 00:40:43,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:40:43,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:43,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-06_00-40-43.log]
[testng] 00:40:43,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a38dfd9 - End of configuration.
[testng] [2024-11-06 00:40:43,295] [pool-1-thread-4] Initializing /data/samples/XING_T24.TGA:
[testng] 00:40:43,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:40:43,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:43,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-06_00-40-43.log]
[testng] 00:40:43,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration.
[testng] [2024-11-06 00:40:43,484] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA:
[testng] 00:40:43,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:40:43,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:43,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-06_00-40-43.log]
[testng] 00:40:43,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69683f83 - End of configuration.
[testng] [2024-11-06 00:40:43,667] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA:
[testng] 00:40:43,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:40:43,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:43,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-06_00-40-43.log]
[testng] 00:40:43,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@616c7f82 - End of configuration.
[testng] [2024-11-06 00:40:47,788] [pool-1-thread-5] Initializing /data/samples/CBW8.TGA:
[testng] [2024-11-06 00:40:47,940] [pool-1-thread-1] Initializing /data/samples/CTC16.TGA:
[testng] [2024-11-06 00:40:48,103] [pool-1-thread-6] Initializing /data/samples/FLAG_B24.TGA:
[testng] [2024-11-06 00:40:48,265] [pool-1-thread-2] Initializing /data/samples/FLAG_B16.TGA:
[testng] [2024-11-06 00:40:48,421] [pool-1-thread-3] Initializing /data/samples/UTC16.TGA:
[testng] [2024-11-06 00:40:48,595] [pool-1-thread-11] Initializing /data/samples/XING_B24.TGA:
[testng] [2024-11-06 00:40:48,744] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA:
[testng] [2024-11-06 00:40:48,921] [pool-1-thread-9] Initializing /data/samples/XING_T32.TGA:
[testng] [2024-11-06 00:40:49,096] [pool-1-thread-12] Initializing /data/samples/XING_B16.TGA:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 21 seconds
Finished: SUCCESS