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Started by upstream project "BIOFORMATS-test-repo" build number 247 originally caused by: Started by upstream project "Trigger" build number 271 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins735574558635802372.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38882_merge_ci -v /uod/idr/repos/curated/nd2:/data -v /uod/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:58:35,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:58:35,333 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:58:35,333 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:58:35,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:58:35,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:58:35,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:58:35,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:58:35,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:58:35,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:58:35,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:58:35,336 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:58:35,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:58:35,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:58:35,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:58:35,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:58:35,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:58:35,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:58:35,515 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:58:35,515 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:58:35,516 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:58:35,516 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:58:35,517 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:58:35,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-06 00:58:35,525] [main] java.version = 17.0.2 [testng] 00:58:35,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:58:35,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:35,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_00-58-35.log] [testng] 00:58:35,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-06 00:58:35,570] [main] testng.directory = /data [testng] [2024-11-06 00:58:35,570] [main] testng.configDirectory = /config [testng] [2024-11-06 00:58:35,578] [main] testng.multiplier = 1.0 [testng] [2024-11-06 00:58:35,579] [main] testng.in-memory = false [testng] [2024-11-06 00:58:35,579] [main] testng.allow-missing = false [testng] [2024-11-06 00:58:35,579] [main] user.language = en [testng] [2024-11-06 00:58:35,579] [main] user.country = ${user.country} [testng] [2024-11-06 00:58:35,579] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-06 01:02:39,367] [main] ---------------------------------------- [testng] [2024-11-06 01:02:39,367] [main] Total files: 275 [testng] [2024-11-06 01:02:39,367] [main] Scan time: 243.788 s (886 ms/file) [testng] [2024-11-06 01:02:39,367] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-06 01:15:13,581] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] 01:15:13,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:15:13,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:13,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_01-15-13.log] [testng] 01:15:13,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f650b4 - End of configuration. [testng] [2024-11-06 01:15:15,064] [pool-1-thread-12] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] 01:15:15,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:15:15,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:15,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-06_01-15-15.log] [testng] 01:15:15,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75892188 - End of configuration. [testng] [2024-11-06 01:15:15,959] [pool-1-thread-11] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] 01:15:15,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:15:15,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:15,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-06_01-15-15.log] [testng] 01:15:15,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d7e023a - End of configuration. [testng] [2024-11-06 01:15:16,825] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] 01:15:16,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:15:16,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:16,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-06_01-15-16.log] [testng] 01:15:16,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f2fcc1c - End of configuration. [testng] [2024-11-06 01:15:18,368] [pool-1-thread-9] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] 01:15:18,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:15:18,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:18,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_01-15-18.log] [testng] 01:15:18,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39bea123 - End of configuration. [testng] [2024-11-06 01:15:19,351] [pool-1-thread-8] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] 01:15:19,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:15:19,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:19,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_01-15-19.log] [testng] 01:15:19,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c22929 - End of configuration. [testng] [2024-11-06 01:15:20,215] [pool-1-thread-7] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] 01:15:20,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:15:20,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:20,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_01-15-20.log] [testng] 01:15:20,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32479b7d - End of configuration. [testng] [2024-11-06 01:15:21,175] [pool-1-thread-6] Initializing /data/strand/Serie040.nd2: [testng] 01:15:21,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:15:21,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:21,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-06_01-15-21.log] [testng] 01:15:21,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b2489b - End of configuration. [testng] [2024-11-06 01:15:22,203] [pool-1-thread-5] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] 01:15:22,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:15:22,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:22,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-06_01-15-22.log] [testng] 01:15:22,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a264ecd - End of configuration. [testng] [2024-11-06 01:15:23,447] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] 01:15:23,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:15:23,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:23,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-06_01-15-23.log] [testng] 01:15:23,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d98041d - End of configuration. [testng] [2024-11-06 01:15:25,026] [pool-1-thread-3] Initializing /data/gaurav/A1.nd2: [testng] 01:15:25,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:15:25,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:25,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-06_01-15-25.log] [testng] 01:15:25,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c0c5092 - End of configuration. [testng] [2024-11-06 01:15:26,020] [pool-1-thread-2] Initializing /data/qa-7906/2591A1.jp2: [testng] 01:15:26,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:15:26,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:26,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-06_01-15-26.log] [testng] 01:15:26,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b47310c - End of configuration. [testng] [2024-11-06 01:15:34,801] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-11-06 01:15:36,434] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-11-06 01:15:37,451] [pool-1-thread-9] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-11-06 01:15:38,855] [pool-1-thread-5] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-11-06 01:15:39,609] [pool-1-thread-3] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-11-06 01:15:40,417] [pool-1-thread-12] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-11-06 01:15:41,291] [pool-1-thread-6] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-11-06 01:15:42,120] [pool-1-thread-10] Initializing /data/michael/opens_ok.nd2: [testng] [2024-11-06 01:15:48,897] [pool-1-thread-1] Initializing /data/brian/MDCK002.nd2: [testng] [2024-11-06 01:15:50,459] [pool-1-thread-3] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-11-06 01:15:51,310] [pool-1-thread-12] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-11-06 01:15:52,315] [pool-1-thread-8] Initializing /data/david/NDSequence013.nd2: [testng] [2024-11-06 01:15:53,304] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-11-06 01:15:54,316] [pool-1-thread-6] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-11-06 01:15:55,290] [pool-1-thread-11] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-11-06 01:15:56,051] [pool-1-thread-9] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-11-06 01:15:58,598] [pool-1-thread-10] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-11-06 01:16:00,076] [pool-1-thread-2] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-11-06 01:16:02,330] [pool-1-thread-1] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-11-06 01:16:04,309] [pool-1-thread-11] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2024-11-06 01:16:06,723] [pool-1-thread-3] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-11-06 01:16:08,315] [pool-1-thread-12] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-11-06 01:16:09,493] [pool-1-thread-7] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-11-06 01:16:10,426] [pool-1-thread-4] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-11-06 01:16:10,649] [pool-1-thread-8] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-11-06 01:16:12,657] [pool-1-thread-6] Initializing /data/dan/120109_test.nd2: [testng] [2024-11-06 01:16:13,588] [pool-1-thread-9] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-11-06 01:16:14,473] [pool-1-thread-5] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-11-06 01:16:17,209] [pool-1-thread-4] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-11-06 01:16:18,351] [pool-1-thread-2] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-11-06 01:16:20,588] [pool-1-thread-10] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-11-06 01:16:21,447] [pool-1-thread-12] Initializing /data/chris/228 and 340.nd2: [testng] [2024-11-06 01:16:24,175] [pool-1-thread-9] Initializing /data/matt/Final merge.nd2: [testng] [2024-11-06 01:16:25,022] [pool-1-thread-5] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-11-06 01:16:25,834] [pool-1-thread-7] Initializing /data/josh/072007h.nd2: [testng] [2024-11-06 01:16:26,586] [pool-1-thread-6] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-11-06 01:16:27,427] [pool-1-thread-3] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-11-06 01:16:32,353] [pool-1-thread-2] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-11-06 01:16:36,848] [pool-1-thread-10] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-11-06 01:16:41,168] [pool-1-thread-4] Initializing /data/kevin/test3.nd2: [testng] [2024-11-06 01:16:42,882] [pool-1-thread-7] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-11-06 01:16:51,549] [pool-1-thread-6] Initializing /data/fiji-655/01.nd2: [testng] [2024-11-06 01:16:52,399] [pool-1-thread-12] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-11-06 01:16:53,190] [pool-1-thread-5] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-11-06 01:16:54,037] [pool-1-thread-9] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-11-06 01:16:57,777] [pool-1-thread-4] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-11-06 01:16:58,577] [pool-1-thread-1] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-11-06 01:17:01,891] [pool-1-thread-6] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-11-06 01:17:02,767] [pool-1-thread-12] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-11-06 01:17:03,674] [pool-1-thread-5] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-11-06 01:17:05,016] [pool-1-thread-4] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-11-06 01:17:08,651] [pool-1-thread-1] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-11-06 01:17:14,617] [pool-1-thread-11] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-11-06 01:17:19,345] [pool-1-thread-6] Initializing /data/public/jonas/512c/nikonTest_two.nd2: [testng] [2024-11-06 01:17:20,391] [pool-1-thread-12] Initializing /data/katherina/120312_488HP_Convallaria nueva - C=1.tif: [testng] [2024-11-06 01:17:21,949] [pool-1-thread-5] Initializing 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[pool-1-thread-8] Initializing /data/public/jonas/control002.nd2: [testng] [2024-11-06 01:18:17,590] [pool-1-thread-5] Initializing /data/qa-7303/CTR_012.nd2: [testng] [2024-11-06 01:18:21,597] [pool-1-thread-6] Initializing /data/kevin/sfeertjes 100 nm 10 000x 15p (1).nd2: [testng] [2024-11-06 01:18:22,995] [pool-1-thread-8] Initializing /data/public/jonas/3.nd2: [testng] [2024-11-06 01:18:45,945] [pool-1-thread-5] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_control_24h_03.nd2: [testng] [2024-11-06 01:18:48,056] [pool-1-thread-9] Initializing /data/qa-29634/20201007_2_OCT4DBD-Halo_PA64625nM_1kframe_tail_7ms_40pert_008.nd2: [testng] [2024-11-06 01:18:49,432] [pool-1-thread-6] Initializing /data/stephen/Cody_Temp_Copy_crop.nd2: [testng] [2024-11-06 01:18:54,412] [pool-1-thread-9] Initializing /data/jcb/201101064/Fig 8B imp beta-BPN MaxIP.nd2: [testng] [2024-11-06 01:18:55,403] [pool-1-thread-6] Initializing /data/cameron/CamND2.nd2: [testng] [2024-11-06 01:18:59,227] [pool-1-thread-5] Initializing /data/michael/10um skewed.nd2: [testng] [2024-11-06 01:19:01,121] [pool-1-thread-12] Initializing /data/qa-29006/Voltron_Test004.nd2: [testng] [2024-11-06 01:19:02,871] [pool-1-thread-6] Initializing /data/venu/nd-two_channel-1.nd2: [testng] [2024-11-06 01:19:06,452] [pool-1-thread-9] Initializing /data/pki/15July2011 ImClone multiwell test file.nd2: [testng] [2024-11-06 01:19:10,549] [pool-1-thread-11] Initializing /data/public/maxime/BF007.nd2: [testng] [2024-11-06 01:19:11,551] [pool-1-thread-6] Initializing /data/richard/KitWv67-72.nd2: [testng] [2024-11-06 01:19:17,621] [pool-1-thread-12] Initializing /data/helene/testseries1.nd2: [testng] [2024-11-06 01:19:18,643] [pool-1-thread-5] Initializing /data/imagesc-76438/Slide2-20-2_ChannelBrightfield_Seq0009.nd2: [testng] [2024-11-06 01:19:19,851] [pool-1-thread-9] Initializing /data/tom/1024x1024.nd2: [testng] [2024-11-06 01:19:25,190] [pool-1-thread-7] Initializing /data/venu/four_160807_control cells_4D.tif: [testng] [2024-11-06 01:19:27,571] [pool-1-thread-11] Initializing /data/michael/opened skewed - C=2.tif: [testng] [2024-11-06 01:19:30,946] [pool-1-thread-5] Initializing /data/venu/N202-5 20x2.nd2: [testng] [2024-11-06 01:19:33,078] [pool-1-thread-9] Initializing /data/qa-17785/spc2493.nd2: [testng] [2024-11-06 01:19:38,233] [pool-1-thread-12] Initializing /data/benjamin/B2.nd2: [testng] [2024-11-06 01:19:41,207] [pool-1-thread-7] Initializing /data/pierre/G.nd2: [testng] [2024-11-06 01:19:43,845] [pool-1-thread-5] Initializing /data/qa-10380/271120.nd2: [testng] [2024-11-06 01:19:44,905] [pool-1-thread-11] Initializing /data/qa-4969/image.nd2: [testng] [2024-11-06 01:19:48,272] [pool-1-thread-6] Initializing /data/liang/1x4 good.nd2: [testng] [2024-11-06 01:19:51,864] [pool-1-thread-9] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001_CropCyan.nd2: [testng] [2024-11-06 01:19:54,417] [pool-1-thread-7] Initializing /data/richard/Nf1#49-#54.nd2: [testng] 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01:20:30,988] [pool-1-thread-4] Initializing /data/public/aryeh/b16_14_12.nd2: [testng] [2024-11-06 01:20:32,029] [pool-1-thread-6] Initializing /data/ylva/FRAP1.nd2: [testng] [2024-11-06 01:20:35,852] [pool-1-thread-11] Initializing /data/david/nc4r-la Ka004.nd2: [testng] [2024-11-06 01:20:36,954] [pool-1-thread-9] Initializing /data/kevin/test2.nd2: [testng] [2024-11-06 01:20:39,172] [pool-1-thread-6] Initializing /data/public/aryeh/Time sequence 24.nd2: [testng] [2024-11-06 01:20:42,851] [pool-1-thread-9] Initializing /data/public/jonas/jonas_nd2Test/Exception61.nd2: [testng] [2024-11-06 01:20:44,675] [pool-1-thread-5] Initializing /data/venu/seven_160807_control cells_4D.tif: [testng] [2024-11-06 01:20:46,050] [pool-1-thread-2] Initializing /data/michael/6timepoints 4channels.nd2: [testng] [2024-11-06 01:20:47,639] [pool-1-thread-11] Initializing /data/mariana/Captured 1.nd2: [testng] [2024-11-06 01:20:48,643] [pool-1-thread-4] Initializing /data/barseno/r1008.nd2: [testng] [2024-11-06 01:20:50,235] [pool-1-thread-12] Initializing /data/public/aryeh/MeOh_high_fluo_003.nd2: [testng] [2024-11-06 01:20:53,562] [pool-1-thread-9] Initializing /data/venu/N202-7 20x.nd2: [testng] [2024-11-06 01:20:55,838] [pool-1-thread-4] Initializing /data/guillaume/Lig_drugs051607.nd2: [testng] [2024-11-06 01:20:59,044] [pool-1-thread-6] Initializing /data/gh-3838/small_test.nd2: [testng] [2024-11-06 01:21:00,107] [pool-1-thread-12] Initializing /data/qa-4305/22492726_Figure 5_B_NA_3.nd2: [testng] [2024-11-06 01:21:01,346] [pool-1-thread-11] Initializing /data/liang/2x2 bad.nd2: [testng] [2024-11-06 01:21:02,399] [pool-1-thread-10] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.avi: [testng] [2024-11-06 01:21:02,912] [pool-1-thread-5] Initializing /data/kevin/lipo100nmPEG_1.nd2: [testng] [2024-11-06 01:21:03,947] [pool-1-thread-2] Initializing /data/qa-28066/20191203-htirf-sona.nd2: [testng] [2024-11-06 01:21:06,718] [pool-1-thread-9] Initializing 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[pool-1-thread-5] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-11-06 01:21:29,062] [pool-1-thread-7] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-11-06 01:21:32,589] [pool-1-thread-6] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-11-06 01:21:33,478] [pool-1-thread-12] Initializing /data/josh/CGE1.nd2: [testng] [2024-11-06 01:21:34,348] [pool-1-thread-4] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-11-06 01:21:36,123] [pool-1-thread-1] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-11-06 01:21:41,133] [pool-1-thread-11] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-11-06 01:21:42,166] [pool-1-thread-5] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-11-06 01:21:43,587] [pool-1-thread-4] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-11-06 01:21:44,771] [pool-1-thread-12] Initializing /data/kyle/F301.nd2: [testng] [2024-11-06 01:21:49,514] [pool-1-thread-9] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-11-06 01:21:51,135] [pool-1-thread-1] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-11-06 01:21:52,761] [pool-1-thread-6] Initializing /data/qa-7908/020514 SH003.nd2: [testng] [2024-11-06 01:21:59,545] [pool-1-thread-4] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-11-06 01:22:03,105] [pool-1-thread-11] Initializing /data/henry/large image.nd2: [testng] [2024-11-06 01:22:04,880] [pool-1-thread-5] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-11-06 01:22:06,669] [pool-1-thread-2] Initializing /data/nadya/flat.nd2: [testng] [2024-11-06 01:22:10,173] [pool-1-thread-12] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-11-06 01:22:13,280] [pool-1-thread-1] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-11-06 01:22:15,313] [pool-1-thread-9] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-11-06 01:22:16,848] [pool-1-thread-6] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-11-06 01:22:20,214] [pool-1-thread-7] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-11-06 01:22:26,050] [pool-1-thread-2] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-11-06 01:22:28,780] [pool-1-thread-11] Initializing /data/david/NDSequence012.nd2: [testng] [2024-11-06 01:22:30,466] [pool-1-thread-5] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-11-06 01:22:33,012] [pool-1-thread-12] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-11-06 01:22:35,652] [pool-1-thread-4] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-11-06 01:22:37,872] [pool-1-thread-1] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-11-06 01:22:40,417] [pool-1-thread-9] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-11-06 01:22:42,063] [pool-1-thread-7] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-11-06 01:23:01,173] [pool-1-thread-6] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-11-06 01:23:06,452] [pool-1-thread-2] Initializing /data/kevin/test1.nd2: [testng] [2024-11-06 01:23:08,160] [pool-1-thread-5] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-11-06 01:23:11,739] [pool-1-thread-11] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-11-06 01:23:13,573] [pool-1-thread-12] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-11-06 01:23:15,630] [pool-1-thread-4] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-11-06 01:23:17,617] [pool-1-thread-9] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-11-06 01:23:21,872] [pool-1-thread-1] Initializing /data/kaustav/cell field2.nd2: [testng] [2024-11-06 01:23:28,129] [pool-1-thread-2] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-11-06 01:23:31,223] [pool-1-thread-5] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-11-06 01:23:33,206] [pool-1-thread-6] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-11-06 01:23:36,442] [pool-1-thread-12] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-11-06 01:23:40,227] [pool-1-thread-11] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-11-06 01:23:43,986] [pool-1-thread-4] Initializing /data/kyle/B204.nd2: [testng] [2024-11-06 01:23:48,962] [pool-1-thread-1] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-11-06 01:23:52,763] [pool-1-thread-9] Initializing /data/david/NDSequence011.nd2: [testng] [2024-11-06 01:23:55,350] [pool-1-thread-3] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-11-06 01:23:59,298] [pool-1-thread-5] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-11-06 01:24:02,737] [pool-1-thread-8] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-11-06 01:24:13,581] [pool-1-thread-12] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-11-06 01:24:17,693] [pool-1-thread-4] Initializing /data/public/karl/sample_image.nd2: [testng] [2024-11-06 01:24:21,396] [pool-1-thread-8] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-11-06 01:24:23,455] [pool-1-thread-9] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-11-06 01:24:25,302] [pool-1-thread-6] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-11-06 01:24:28,918] [pool-1-thread-3] Initializing /data/stefanie/nd27.nd2: [testng] [2024-11-06 01:24:31,134] [pool-1-thread-1] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-11-06 01:24:37,909] [pool-1-thread-12] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-11-06 01:24:40,143] [pool-1-thread-11] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-11-06 01:24:42,095] [pool-1-thread-2] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-11-06 01:24:44,211] [pool-1-thread-5] Initializing /data/qa-17695/sample.nd2: [testng] [2024-11-06 01:24:46,051] [pool-1-thread-4] Initializing /data/kevin/100nm_1.nd2: [testng] [2024-11-06 01:24:54,334] [pool-1-thread-9] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-11-06 01:24:56,834] [pool-1-thread-8] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-11-06 01:24:59,870] [pool-1-thread-6] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-11-06 01:25:04,224] [pool-1-thread-3] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-11-06 01:25:06,815] [pool-1-thread-12] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-11-06 01:25:11,927] [pool-1-thread-2] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-11-06 01:25:16,875] [pool-1-thread-5] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-11-06 01:29:11,894] [pool-1-thread-11] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-11-06 01:29:13,280] [pool-1-thread-4] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-11-06 01:29:14,624] [pool-1-thread-9] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-11-06 01:29:23,131] [pool-1-thread-9] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-11-06 01:29:24,488] [pool-1-thread-3] Initializing /data/david/_t4h f.nd2: [testng] [2024-11-06 01:29:25,533] [pool-1-thread-2] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-11-06 01:29:26,687] [pool-1-thread-12] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-11-06 01:29:27,828] [pool-1-thread-6] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-11-06 01:29:29,442] [pool-1-thread-4] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-11-06 01:29:31,144] [pool-1-thread-11] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2024-11-06 01:29:38,879] [pool-1-thread-3] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-11-06 01:29:40,456] [pool-1-thread-12] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-11-06 01:29:41,910] [pool-1-thread-2] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-11-06 01:29:43,370] [pool-1-thread-9] Initializing /data/qa-7572/cells.nd2: [testng] [2024-11-06 01:29:44,940] [pool-1-thread-4] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-11-06 01:29:46,356] [pool-1-thread-11] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-11-06 01:30:24,841] [pool-1-thread-8] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-11-06 01:30:28,379] [pool-1-thread-6] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-11-06 01:30:31,428] [pool-1-thread-12] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-11-06 01:30:32,741] [pool-1-thread-3] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-11-06 01:30:34,841] [pool-1-thread-2] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-11-06 01:30:36,090] [pool-1-thread-9] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-11-06 01:30:37,585] [pool-1-thread-4] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-11-06 01:30:44,421] [pool-1-thread-3] Initializing /data/bernhard/962.nd2: [testng] [2024-11-06 01:30:45,831] [pool-1-thread-12] Initializing /data/michael/opens_skewed.nd2: [testng] [2024-11-06 01:30:47,987] [pool-1-thread-8] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-11-06 01:30:50,296] [pool-1-thread-2] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-11-06 01:30:51,879] [pool-1-thread-7] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-11-06 01:30:53,218] [pool-1-thread-4] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-11-06 01:30:54,814] [pool-1-thread-9] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-11-06 01:31:03,830] [pool-1-thread-7] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-11-06 01:31:09,018] [pool-1-thread-2] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-11-06 01:31:10,660] [pool-1-thread-4] Initializing /data/qa-4958/521_t1.nd2: [testng] [2024-11-06 01:31:11,846] [pool-1-thread-9] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 58 minutes 8 seconds Finished: SUCCESS