Started by upstream project "BIOFORMATS-test-repo" build number 247
originally caused by:
Started by upstream project "Trigger" build number 271
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins13442089801775220064.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38982_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:33:08,271 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:33:08,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 05:33:08,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:33:08,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:33:08,273 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:33:08,273 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:33:08,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:33:08,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:33:08,274 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:33:08,275 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:33:08,275 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:33:08,275 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:33:08,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:33:08,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:33:08,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:33:08,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:33:08,449 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:33:08,449 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:33:08,449 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:33:08,449 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:33:08,449 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 05:33:08,450 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 05:33:08,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 176 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-06 05:33:08,458] [main] java.version = 17.0.2
[testng] 05:33:08,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:33:08,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:08,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-06_05-33-08.log]
[testng] 05:33:08,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-11-06 05:33:08,502] [main] testng.directory = /data
[testng] [2024-11-06 05:33:08,502] [main] testng.configDirectory = /config
[testng] [2024-11-06 05:33:08,510] [main] testng.multiplier = 1.0
[testng] [2024-11-06 05:33:08,511] [main] testng.in-memory = false
[testng] [2024-11-06 05:33:08,511] [main] testng.allow-missing = false
[testng] [2024-11-06 05:33:08,511] [main] user.language = en
[testng] [2024-11-06 05:33:08,511] [main] user.country = ${user.country}
[testng] [2024-11-06 05:33:08,511] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-06 05:33:16,686] [main] ----------------------------------------
[testng] [2024-11-06 05:33:16,686] [main] Total files: 22
[testng] [2024-11-06 05:33:16,686] [main] Scan time: 8.175 s (371 ms/file)
[testng] [2024-11-06 05:33:16,686] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-06 05:33:42,261] [pool-1-thread-1] Initializing /data/converted/clown.ipw:
[testng] 05:33:42,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:33:42,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:42,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-06_05-33-42.log]
[testng] 05:33:42,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13248431 - End of configuration.
[testng] [2024-11-06 05:33:42,866] [pool-1-thread-12] Initializing /data/converted/dub01.seq:
[testng] 05:33:42,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:33:42,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:42,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-06_05-33-42.log]
[testng] 05:33:42,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7685806e - End of configuration.
[testng] [2024-11-06 05:33:43,519] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF:
[testng] 05:33:43,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:33:43,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:43,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-06_05-33-43.log]
[testng] 05:33:43,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8049b60 - End of configuration.
[testng] [2024-11-06 05:33:45,032] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 05:33:45,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:33:45,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:45,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-06_05-33-45.log]
[testng] 05:33:45,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13a088ec - End of configuration.
[testng] [2024-11-06 05:33:45,636] [pool-1-thread-9] Initializing /data/converted/clown8c.seq:
[testng] 05:33:45,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:33:45,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:45,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-06_05-33-45.log]
[testng] 05:33:45,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42fdfac5 - End of configuration.
[testng] [2024-11-06 05:33:46,582] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq:
[testng] 05:33:46,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:33:46,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:46,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-06_05-33-46.log]
[testng] 05:33:46,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@854b0d3 - End of configuration.
[testng] [2024-11-06 05:33:47,349] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw:
[testng] 05:33:47,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:33:47,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:47,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-06_05-33-47.log]
[testng] 05:33:47,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6d87e0 - End of configuration.
[testng] [2024-11-06 05:33:48,041] [pool-1-thread-6] Initializing /data/converted/clown8c.tif:
[testng] 05:33:48,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:33:48,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:48,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-06_05-33-48.log]
[testng] 05:33:48,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f8f5386 - End of configuration.
[testng] [2024-11-06 05:33:49,588] [pool-1-thread-5] Initializing /data/converted/dub01.ipw:
[testng] 05:33:49,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:33:49,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:49,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-06_05-33-49.log]
[testng] 05:33:49,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4acc8fc1 - End of configuration.
[testng] [2024-11-06 05:33:50,194] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 05:33:50,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:33:50,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:50,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-06_05-33-50.log]
[testng] 05:33:50,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673bbc81 - End of configuration.
[testng] [2024-11-06 05:33:50,862] [pool-1-thread-3] Initializing /data/converted/dub01.pic:
[testng] 05:33:50,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:33:50,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:50,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-06_05-33-50.log]
[testng] 05:33:50,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e571ae - End of configuration.
[testng] [2024-11-06 05:33:51,593] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq:
[testng] 05:33:51,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:33:51,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:33:51,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-06_05-33-51.log]
[testng] 05:33:51,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2248a77e - End of configuration.
[testng] [2024-11-06 05:33:58,933] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-11-06 05:34:01,082] [pool-1-thread-4] Initializing /data/converted/clown.tif:
[testng] [2024-11-06 05:34:01,761] [pool-1-thread-1] Initializing /data/samples/PROBE.TIF:
[testng] [2024-11-06 05:34:03,065] [pool-1-thread-3] Initializing /data/converted/clown.seq:
[testng] [2024-11-06 05:34:03,719] [pool-1-thread-9] Initializing /data/samples/HEART.SEQ:
[testng] [2024-11-06 05:34:04,308] [pool-1-thread-5] Initializing /data/converted/mitosis-test.tif:
[testng] [2024-11-06 05:34:05,755] [pool-1-thread-2] Initializing /data/converted/clown8c.ipw:
[testng] [2024-11-06 05:34:06,324] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-11-06 05:34:06,904] [pool-1-thread-10] Initializing /data/samples/TISSUE.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 48 seconds
Finished: SUCCESS