Started by upstream project "BIOFORMATS-test-repo" build number 248
originally caused by:
 Started by upstream project "Trigger" build number 272
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1476739739667456823.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39055_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
    [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
    [javac] 4 warnings

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:26:17,760 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:26:17,762 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
   [testng] 01:26:17,762 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:26:17,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:26:17,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:26:17,763 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:26:17,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:26:17,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:26:17,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:26:17,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:26:17,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:26:17,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:26:17,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:26:17,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:26:17,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:26:17,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:26:17,958 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:26:17,958 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:26:17,959 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:26:17,959 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:26:17,959 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
   [testng] 01:26:17,960 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
   [testng] 01:26:17,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-07 01:26:17,969] [main] java.version = 21
   [testng] 01:26:17,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:26:17,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:26:18,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-07_01-26-17.log]
   [testng] 01:26:18,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
   [testng] [2024-11-07 01:26:18,017] [main] testng.directory = /data
   [testng] [2024-11-07 01:26:18,017] [main] testng.configDirectory = /config
   [testng] [2024-11-07 01:26:18,026] [main] testng.multiplier = 1.0
   [testng] [2024-11-07 01:26:18,026] [main] testng.in-memory = false
   [testng] [2024-11-07 01:26:18,026] [main] testng.allow-missing = false
   [testng] [2024-11-07 01:26:18,026] [main] user.language = en
   [testng] [2024-11-07 01:26:18,027] [main] user.country = ${user.country}
   [testng] [2024-11-07 01:26:18,027] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-07 01:26:50,894] [main] ----------------------------------------
   [testng] [2024-11-07 01:26:50,894] [main] Total files: 25
   [testng] [2024-11-07 01:26:50,894] [main] Scan time: 32.867 s (1314 ms/file)
   [testng] [2024-11-07 01:26:50,895] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 18 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-07 01:27:23,751] [pool-1-thread-1] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png: 
   [testng] 01:27:23,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:27:23,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:23,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-07_01-27-23.log]
   [testng] 01:27:23,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2de05378 - End of configuration.
   [testng] [2024-11-07 01:27:23,845] [pool-1-thread-12] Initializing /data/imagic/TEM 10118.dm2: 
   [testng] 01:27:23,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:27:23,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:23,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-07_01-27-23.log]
   [testng] 01:27:23,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be85835 - End of configuration.
   [testng] [2024-11-07 01:27:24,343] [pool-1-thread-11] Initializing /data/imagic/not read correctly/Abeta Moon.dm2: 
   [testng] 01:27:24,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:27:24,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:24,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-07_01-27-24.log]
   [testng] 01:27:24,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7b84e - End of configuration.
   [testng] [2024-11-07 01:27:24,783] [pool-1-thread-10] Initializing /data/pang/unproc-auto: 
   [testng] 01:27:24,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:27:24,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:24,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-07_01-27-24.log]
   [testng] 01:27:24,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7278c9a5 - End of configuration.
   [testng] [2024-11-07 01:27:25,291] [pool-1-thread-9] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png: 
   [testng] 01:27:25,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:27:25,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:25,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-07_01-27-25.log]
   [testng] 01:27:25,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59e7a2e6 - End of configuration.
   [testng] [2024-11-07 01:27:25,359] [pool-1-thread-8] Initializing /data/imagic/1-1.dm2: 
   [testng] 01:27:25,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:27:25,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:25,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-07_01-27-25.log]
   [testng] 01:27:25,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@141fc1fc - End of configuration.
   [testng] [2024-11-07 01:27:25,757] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png: 
   [testng] 01:27:25,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:27:25,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:25,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-07_01-27-25.log]
   [testng] 01:27:25,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7230887c - End of configuration.
   [testng] [2024-11-07 01:27:25,816] [pool-1-thread-6] Initializing /data/pang/signed: 
   [testng] 01:27:25,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:27:25,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:25,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-07_01-27-25.log]
   [testng] 01:27:25,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e6cf46b - End of configuration.
   [testng] [2024-11-07 01:27:26,353] [pool-1-thread-5] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2: 
   [testng] 01:27:26,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:27:26,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:26,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-07_01-27-26.log]
   [testng] 01:27:26,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b9e56c - End of configuration.
   [testng] [2024-11-07 01:27:26,814] [pool-1-thread-4] Initializing /data/pang/10500x-o4: 
   [testng] 01:27:26,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:27:26,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:26,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-07_01-27-26.log]
   [testng] 01:27:26,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69982740 - End of configuration.
   [testng] [2024-11-07 01:27:27,256] [pool-1-thread-3] Initializing /data/imagic/not read correctly/Zucchini_preview.png: 
   [testng] 01:27:27,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:27:27,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:27,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-07_01-27-27.log]
   [testng] 01:27:27,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73cc0dbf - End of configuration.
   [testng] [2024-11-07 01:27:27,323] [pool-1-thread-2] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png: 
   [testng] 01:27:27,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:27:27,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:27:27,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-07_01-27-27.log]
   [testng] 01:27:27,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b1d8a96 - End of configuration.
   [testng] [2024-11-07 01:27:31,313] [pool-1-thread-2] Initializing /data/imagic/13008.dm2: 
   [testng] [2024-11-07 01:27:31,783] [pool-1-thread-7] Initializing /data/imagic/not read correctly/Zucchini.dm2: 
   [testng] [2024-11-07 01:27:32,289] [pool-1-thread-1] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png: 
   [testng] [2024-11-07 01:27:32,358] [pool-1-thread-9] Initializing /data/pang/DLMeD2E1_010500x03.dm2: 
   [testng] [2024-11-07 01:27:32,823] [pool-1-thread-3] Initializing /data/pang/grating025k.dm2: 
   [testng] [2024-11-07 01:27:34,118] [pool-1-thread-11] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 954, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 23 seconds
Finished: SUCCESS