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Started by upstream project "BIOFORMATS-test-repo" build number 248 originally caused by: Started by upstream project "Trigger" build number 272 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9712327851754765522.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39077_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:06:40,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:06:40,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 02:06:40,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:06:40,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:06:40,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:06:40,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:06:40,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:06:40,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:06:40,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:06:40,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:06:40,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:06:40,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:06:40,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:06:40,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:06:40,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:06:40,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:06:40,486 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:06:40,486 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:06:40,486 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:06:40,487 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:06:40,487 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 02:06:40,487 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 02:06:40,487 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-07 02:06:40,496] [main] java.version = 21 [testng] 02:06:40,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:06:40,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:40,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-07_02-06-40.log] [testng] 02:06:40,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-07 02:06:40,540] [main] testng.directory = /data [testng] [2024-11-07 02:06:40,540] [main] testng.configDirectory = /config [testng] [2024-11-07 02:06:40,548] [main] testng.multiplier = 1.0 [testng] [2024-11-07 02:06:40,549] [main] testng.in-memory = false [testng] [2024-11-07 02:06:40,549] [main] testng.allow-missing = false [testng] [2024-11-07 02:06:40,549] [main] user.language = en [testng] [2024-11-07 02:06:40,549] [main] user.country = ${user.country} [testng] [2024-11-07 02:06:40,549] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-07 02:09:55,377] [main] ---------------------------------------- [testng] [2024-11-07 02:09:55,378] [main] Total files: 268 [testng] [2024-11-07 02:09:55,378] [main] Scan time: 194.828 s (726 ms/file) [testng] [2024-11-07 02:09:55,378] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-07 02:15:25,982] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 02:15:25,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:15:25,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:25,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-07_02-15-25.log] [testng] 02:15:25,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75544873 - End of configuration. [testng] [2024-11-07 02:15:27,990] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:15:27,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:15:27,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:27,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-07_02-15-27.log] [testng] 02:15:27,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ab3e1c - End of configuration. [testng] [2024-11-07 02:15:28,650] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 02:15:28,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:15:28,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:28,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-07_02-15-28.log] [testng] 02:15:28,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4998a435 - End of configuration. [testng] [2024-11-07 02:15:29,739] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] 02:15:29,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:15:29,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:29,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-07_02-15-29.log] [testng] 02:15:29,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@533c8502 - End of configuration. [testng] [2024-11-07 02:15:30,478] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] 02:15:30,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:15:30,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:30,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-07_02-15-30.log] [testng] 02:15:30,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7298e483 - End of configuration. [testng] [2024-11-07 02:15:31,217] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] 02:15:31,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:15:31,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:31,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-07_02-15-31.log] [testng] 02:15:31,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67aef899 - End of configuration. [testng] [2024-11-07 02:15:31,898] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] 02:15:31,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:15:31,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:31,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-07_02-15-31.log] [testng] 02:15:31,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e7b7fbf - End of configuration. [testng] [2024-11-07 02:15:32,938] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] 02:15:32,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:15:32,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:32,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-07_02-15-32.log] [testng] 02:15:32,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104fb57a - End of configuration. [testng] [2024-11-07 02:15:33,679] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] 02:15:33,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:15:33,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:33,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-07_02-15-33.log] [testng] 02:15:33,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28b90da6 - End of configuration. [testng] [2024-11-07 02:15:34,410] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 02:15:34,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:15:34,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:34,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-07_02-15-34.log] [testng] 02:15:34,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6625c490 - End of configuration. [testng] [2024-11-07 02:15:35,449] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 02:15:35,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:15:35,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:35,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-07_02-15-35.log] [testng] 02:15:35,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa9cfbf - End of configuration. [testng] [2024-11-07 02:15:36,153] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 02:15:36,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:15:36,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:15:36,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-07_02-15-36.log] [testng] 02:15:36,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4203f11b - End of configuration. [testng] [2024-11-07 02:15:43,255] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-07 02:15:45,930] [pool-1-thread-3] Initializing /data/steve/FITS/M13.fits: [testng] [2024-11-07 02:15:46,175] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-07 02:15:46,808] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-11-07 02:15:47,490] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-07 02:15:48,113] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-07 02:15:48,493] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-07 02:15:51,522] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-11-07 02:15:55,136] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-07 02:15:56,759] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-07 02:15:57,868] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-07 02:15:58,402] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-07 02:15:59,811] [pool-1-thread-4] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-07 02:16:00,535] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-07 02:16:03,034] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-07 02:16:05,778] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-07 02:16:06,430] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-11-07 02:16:10,910] [pool-1-thread-12] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-07 02:16:11,165] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-07 02:16:14,116] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-07 02:16:15,886] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-07 02:16:17,159] [pool-1-thread-10] Initializing /data/steve/FITS/M51.fits: [testng] [2024-11-07 02:16:17,384] [pool-1-thread-8] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-11-07 02:16:19,727] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-07 02:16:21,970] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-07 02:16:22,499] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-07 02:16:22,708] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-11-07 02:16:26,400] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-07 02:16:30,161] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-07 02:16:31,017] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-07 02:16:34,538] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-11-07 02:16:37,278] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-07 02:16:38,381] [pool-1-thread-1] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-07 02:16:39,591] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-07 02:16:43,272] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-07 02:16:45,818] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-11-07 02:16:47,975] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-07 02:16:49,476] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-11-07 02:16:50,448] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-11-07 02:16:53,012] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-07 02:16:55,861] [pool-1-thread-4] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-07 02:16:58,581] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-11-07 02:16:59,765] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-07 02:17:01,462] [pool-1-thread-2] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-07 02:17:02,957] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-07 02:17:06,121] [pool-1-thread-3] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-07 02:17:07,962] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-07 02:17:10,647] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-07 02:17:11,486] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-07 02:17:14,050] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-07 02:17:15,445] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-07 02:17:17,431] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-07 02:17:18,318] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-11-07 02:17:20,261] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-07 02:17:21,394] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-11-07 02:17:22,206] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-07 02:17:22,555] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-11-07 02:17:24,936] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-07 02:17:25,763] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-07 02:17:26,981] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-07 02:17:27,584] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-07 02:17:28,741] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-07 02:17:31,040] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-07 02:17:32,588] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-07 02:17:33,306] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-11-07 02:17:34,172] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-11-07 02:17:34,790] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-07 02:17:35,684] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-07 02:17:36,315] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-07 02:17:38,730] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-11-07 02:17:41,265] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-07 02:17:42,130] [pool-1-thread-9] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-11-07 02:17:46,774] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-07 02:17:49,015] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-11-07 02:17:50,666] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-07 02:17:51,416] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-07 02:17:52,447] [pool-1-thread-2] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-07 02:17:54,104] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-07 02:17:54,539] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-07 02:17:55,301] [pool-1-thread-5] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-07 02:17:57,637] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-07 02:17:58,614] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-07 02:18:00,722] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-07 02:18:01,544] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-07 02:18:02,643] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-11-07 02:18:03,336] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-07 02:18:03,804] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-11-07 02:18:04,601] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-07 02:18:06,816] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-07 02:18:07,906] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-11-07 02:18:09,346] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-07 02:18:10,183] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-07 02:18:12,388] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-07 02:18:13,114] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-11-07 02:18:13,825] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-07 02:18:16,195] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-07 02:18:16,548] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-07 02:18:17,243] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-07 02:18:18,391] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-07 02:18:20,423] [pool-1-thread-10] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-07 02:18:22,988] [pool-1-thread-7] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-07 02:18:24,998] [pool-1-thread-8] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-07 02:18:27,065] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-07 02:18:27,716] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-07 02:18:28,457] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-07 02:18:29,094] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-07 02:18:31,067] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-11-07 02:18:36,293] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-11-07 02:18:37,862] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-07 02:18:38,765] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-07 02:18:41,534] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-07 02:18:42,952] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-07 02:18:45,433] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-07 02:18:48,231] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-07 02:18:50,271] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-07 02:18:53,253] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-07 02:18:56,985] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-07 02:18:58,317] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-11-07 02:18:59,895] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-07 02:19:01,310] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-07 02:19:02,564] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-07 02:19:03,349] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-07 02:19:05,609] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-07 02:19:10,114] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-07 02:19:11,849] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-07 02:19:12,728] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-07 02:19:14,796] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-07 02:19:15,651] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-07 02:19:17,609] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-11-07 02:19:18,343] [pool-1-thread-1] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-07 02:19:22,761] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-07 02:19:24,913] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-11-07 02:19:26,435] [pool-1-thread-4] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-07 02:19:29,786] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-07 02:19:30,394] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-11-07 02:19:30,956] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-07 02:19:31,609] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-07 02:19:32,188] [pool-1-thread-10] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-07 02:19:32,993] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-07 02:19:36,575] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-07 02:19:39,436] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-07 02:19:43,723] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-07 02:19:46,107] [pool-1-thread-5] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-07 02:19:48,448] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-11-07 02:19:51,578] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-07 02:19:52,687] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-11-07 02:19:54,976] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-07 02:19:56,089] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 M 40s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 33 seconds Finished: SUCCESS