Started by upstream project "BIOFORMATS-test-repo" build number 30
originally caused by:
Started by upstream project "Trigger" build number 33
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16124383398627052021.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_3909_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:19:46,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:19:46,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:19:46,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:19:46,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:19:46,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:19:46,997 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:19:46,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:19:46,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:19:46,997 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:19:46,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:19:46,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:19:46,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:19:47,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:19:47,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:19:47,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:19:47,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:19:47,177 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:19:47,177 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:19:47,177 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:19:47,178 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:19:47,178 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:19:47,179 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:19:47,179 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-11 01:19:47,187] [main] java.version = 21
[testng] 01:19:47,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:19:47,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:47,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-11_01-19-47.log]
[testng] 01:19:47,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-04-11 01:19:47,233] [main] testng.directory = /data
[testng] [2024-04-11 01:19:47,233] [main] testng.configDirectory = /config
[testng] [2024-04-11 01:19:47,241] [main] testng.multiplier = 1.0
[testng] [2024-04-11 01:19:47,242] [main] testng.in-memory = false
[testng] [2024-04-11 01:19:47,242] [main] testng.allow-missing = false
[testng] [2024-04-11 01:19:47,242] [main] user.language = en
[testng] [2024-04-11 01:19:47,242] [main] user.country = ${user.country}
[testng] [2024-04-11 01:19:47,242] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-11 01:19:47,691] [main] ----------------------------------------
[testng] [2024-04-11 01:19:47,691] [main] Total files: 36
[testng] [2024-04-11 01:19:47,691] [main] Scan time: 0.449 s (12 ms/file)
[testng] [2024-04-11 01:19:47,691] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-11 01:19:48,754] [pool-1-thread-1] Initializing /data/generated/mri-stack17.pcx:
[testng] 01:19:48,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:19:48,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-11_01-19-48.log]
[testng] 01:19:48,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7ef054 - End of configuration.
[testng] [2024-04-11 01:19:48,767] [pool-1-thread-12] Initializing /data/generated/mri-stack15.pcx:
[testng] 01:19:48,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:19:48,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-11_01-19-48.log]
[testng] 01:19:48,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e054f13 - End of configuration.
[testng] [2024-04-11 01:19:48,773] [pool-1-thread-11] Initializing /data/generated/mri-stack18.pcx:
[testng] 01:19:48,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:19:48,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-11_01-19-48.log]
[testng] 01:19:48,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43cde3e7 - End of configuration.
[testng] [2024-04-11 01:19:48,778] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx:
[testng] 01:19:48,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:19:48,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-11_01-19-48.log]
[testng] 01:19:48,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@342a5d84 - End of configuration.
[testng] [2024-04-11 01:19:48,784] [pool-1-thread-9] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] 01:19:48,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:19:48,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-11_01-19-48.log]
[testng] 01:19:48,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c20cae - End of configuration.
[testng] [2024-04-11 01:19:48,798] [pool-1-thread-8] Initializing /data/generated/mri-stack5.pcx:
[testng] 01:19:48,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:19:48,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-11_01-19-48.log]
[testng] 01:19:48,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7ef75b - End of configuration.
[testng] [2024-04-11 01:19:48,806] [pool-1-thread-7] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] 01:19:48,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:19:48,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-11_01-19-48.log]
[testng] 01:19:48,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23d26472 - End of configuration.
[testng] [2024-04-11 01:19:48,817] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx:
[testng] 01:19:48,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:19:48,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-11_01-19-48.log]
[testng] 01:19:48,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ee1702 - End of configuration.
[testng] [2024-04-11 01:19:48,824] [pool-1-thread-5] Initializing /data/generated/mri-stack7.pcx:
[testng] 01:19:48,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:19:48,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-11_01-19-48.log]
[testng] 01:19:48,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@226c77dd - End of configuration.
[testng] [2024-04-11 01:19:48,831] [pool-1-thread-4] Initializing /data/generated/mri-stack21.pcx:
[testng] 01:19:48,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:19:48,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-11_01-19-48.log]
[testng] 01:19:48,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505501df - End of configuration.
[testng] [2024-04-11 01:19:48,837] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx:
[testng] 01:19:48,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:19:48,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-11_01-19-48.log]
[testng] 01:19:48,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74db2791 - End of configuration.
[testng] [2024-04-11 01:19:48,843] [pool-1-thread-2] Initializing /data/generated/mri-stack11.pcx:
[testng] 01:19:48,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:19:48,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:19:48,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-11_01-19-48.log]
[testng] 01:19:48,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58da4d70 - End of configuration.
[testng] [2024-04-11 01:19:51,427] [pool-1-thread-10] Initializing /data/generated/mri-stack22.pcx:
[testng] [2024-04-11 01:19:51,432] [pool-1-thread-11] Initializing /data/generated/mri-stack26.pcx:
[testng] [2024-04-11 01:19:51,436] [pool-1-thread-8] Initializing /data/generated/mri-stack3.pcx:
[testng] [2024-04-11 01:19:51,440] [pool-1-thread-5] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-04-11 01:19:51,444] [pool-1-thread-6] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-04-11 01:19:51,450] [pool-1-thread-1] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-04-11 01:19:51,456] [pool-1-thread-2] Initializing /data/generated/mri-stack25.pcx:
[testng] [2024-04-11 01:19:51,462] [pool-1-thread-12] Initializing /data/generated/mri-stack10.pcx:
[testng] [2024-04-11 01:19:51,467] [pool-1-thread-3] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] [2024-04-11 01:19:51,475] [pool-1-thread-4] Initializing /data/generated/mri-stack23.pcx:
[testng] [2024-04-11 01:19:51,478] [pool-1-thread-7] Initializing /data/generated/mri-stack14.pcx:
[testng] [2024-04-11 01:19:51,482] [pool-1-thread-9] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-04-11 01:19:51,759] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] [2024-04-11 01:19:51,856] [pool-1-thread-10] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng] [2024-04-11 01:19:51,866] [pool-1-thread-12] Initializing /data/generated/mri-stack16.pcx:
[testng] [2024-04-11 01:19:51,871] [pool-1-thread-4] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-04-11 01:19:51,879] [pool-1-thread-1] Initializing /data/generated/mri-stack4.pcx:
[testng] [2024-04-11 01:19:51,884] [pool-1-thread-7] Initializing /data/generated/mri-stack0.pcx:
[testng] [2024-04-11 01:19:51,890] [pool-1-thread-5] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-04-11 01:19:51,895] [pool-1-thread-8] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-04-11 01:19:51,901] [pool-1-thread-2] Initializing /data/generated/mri-stack2.pcx:
[testng] [2024-04-11 01:19:52,074] [pool-1-thread-12] Initializing /data/generated/mri-stack24.pcx:
[testng] [2024-04-11 01:19:52,077] [pool-1-thread-8] Initializing /data/generated/mri-stack6.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS