Started by upstream project "BIOFORMATS-test-repo" build number 248
originally caused by:
Started by upstream project "Trigger" build number 272
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins11987777421565464944.sh
+ '[' zeiss-tiff = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39117_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:05:50,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:05:50,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 04:05:50,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:05:50,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:05:50,806 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:05:50,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:05:50,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:05:50,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:05:50,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:05:50,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:05:50,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:05:50,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:05:50,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:05:50,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:05:50,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:05:50,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:05:50,984 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:05:50,984 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:05:50,984 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:05:50,985 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:05:50,985 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 04:05:50,985 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 04:05:50,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-07 04:05:50,994] [main] java.version = 21
[testng] 04:05:50,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:05:50,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:05:51,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-07_04-05-51.log]
[testng] 04:05:51,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-11-07 04:05:51,037] [main] testng.directory = /data
[testng] [2024-11-07 04:05:51,038] [main] testng.configDirectory = /config
[testng] [2024-11-07 04:05:51,046] [main] testng.multiplier = 1.0
[testng] [2024-11-07 04:05:51,046] [main] testng.in-memory = false
[testng] [2024-11-07 04:05:51,046] [main] testng.allow-missing = false
[testng] [2024-11-07 04:05:51,046] [main] user.language = en
[testng] [2024-11-07 04:05:51,046] [main] user.country = ${user.country}
[testng] [2024-11-07 04:05:51,046] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-07 04:07:19,351] [main] ----------------------------------------
[testng] [2024-11-07 04:07:19,351] [main] Total files: 15735
[testng] [2024-11-07 04:07:19,351] [main] Scan time: 88.304 s (5 ms/file)
[testng] [2024-11-07 04:07:19,352] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 125 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-07 04:08:45,302] [pool-1-thread-1] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif:
[testng] 04:08:45,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:08:45,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:45,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-07_04-08-45.log]
[testng] 04:08:45,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ca21e4b - End of configuration.
[testng] [2024-11-07 04:08:46,105] [pool-1-thread-12] Initializing /data/converted/joseph/E-2009_0022.tif:
[testng] 04:08:46,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:08:46,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:46,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-07_04-08-46.log]
[testng] 04:08:46,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6e09c9 - End of configuration.
[testng] [2024-11-07 04:08:46,864] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif:
[testng] 04:08:46,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:08:46,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:46,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-07_04-08-46.log]
[testng] 04:08:46,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145cdf9b - End of configuration.
[testng] [2024-11-07 04:08:47,354] [pool-1-thread-10] Initializing /data/converted/monica/Monica_elegans_movie.tif:
[testng] 04:08:47,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:08:47,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:47,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-07_04-08-47.log]
[testng] 04:08:47,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@854b0d3 - End of configuration.
[testng] [2024-11-07 04:08:48,956] [pool-1-thread-9] Initializing /data/converted/dan/zstack_convalaria.tif:
[testng] 04:08:48,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:08:48,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:48,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-07_04-08-48.log]
[testng] 04:08:48,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673bbc81 - End of configuration.
[testng] [2024-11-07 04:08:49,417] [pool-1-thread-8] Initializing /data/converted/lior/live+cf5b.tif:
[testng] 04:08:49,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:08:49,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:49,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-07_04-08-49.log]
[testng] 04:08:49,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25726066 - End of configuration.
[testng] [2024-11-07 04:08:49,923] [pool-1-thread-7] Initializing /data/scott/Slide133-01.tif:
[testng] 04:08:49,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:08:49,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:49,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-07_04-08-49.log]
[testng] 04:08:49,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@750ddb90 - End of configuration.
[testng] [2024-11-07 04:08:50,411] [pool-1-thread-6] Initializing /data/scott/Slide133-04.tif:
[testng] 04:08:50,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:08:50,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:50,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-07_04-08-50.log]
[testng] 04:08:50,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@294f527f - End of configuration.
[testng] [2024-11-07 04:08:51,082] [pool-1-thread-5] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif:
[testng] 04:08:51,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:08:51,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:51,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-07_04-08-51.log]
[testng] 04:08:51,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4013e035 - End of configuration.
[testng] [2024-11-07 04:08:51,774] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif:
[testng] 04:08:51,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:08:51,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:51,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-07_04-08-51.log]
[testng] 04:08:51,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e4d1825 - End of configuration.
[testng] [2024-11-07 04:08:52,281] [pool-1-thread-3] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif:
[testng] 04:08:52,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:08:52,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:52,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-07_04-08-52.log]
[testng] 04:08:52,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f12ee7 - End of configuration.
[testng] [2024-11-07 04:08:52,745] [pool-1-thread-2] Initializing /data/scott/Slide133-08.tif:
[testng] 04:08:52,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:08:52,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:08:52,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-07_04-08-52.log]
[testng] 04:08:52,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eb24782 - End of configuration.
[testng] [2024-11-07 04:09:08,939] [pool-1-thread-11] Initializing /data/converted/michel/c.tif:
[testng] [2024-11-07 04:09:09,990] [pool-1-thread-3] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif:
[testng] [2024-11-07 04:09:13,350] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama.tif:
[testng] [2024-11-07 04:09:14,261] [pool-1-thread-6] Initializing /data/converted/converted/damian.tif:
[testng] [2024-11-07 04:09:15,225] [pool-1-thread-2] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif:
[testng] [2024-11-07 04:09:16,208] [pool-1-thread-4] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif:
[testng] [2024-11-07 04:09:17,560] [pool-1-thread-9] Initializing /data/converted/sebastien/F1.tif:
[testng] [2024-11-07 04:09:23,850] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A2.tif:
[testng] [2024-11-07 04:09:31,001] [pool-1-thread-6] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif:
[testng] [2024-11-07 04:09:33,640] [pool-1-thread-2] Initializing /data/converted/kelsey/1300x1030BW.tif:
[testng] [2024-11-07 04:09:34,890] [pool-1-thread-11] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif:
[testng] [2024-11-07 04:09:48,728] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif:
[testng] [2024-11-07 04:09:50,196] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif:
[testng] [2024-11-07 04:09:51,712] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif:
[testng] [2024-11-07 04:11:38,616] [pool-1-thread-5] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif:
[testng] [2024-11-07 04:12:01,090] [pool-1-thread-9] Initializing /data/scott/Slide133-11.tif:
[testng] [2024-11-07 04:12:15,997] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A1.tif:
[testng] [2024-11-07 04:12:22,555] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif:
[testng] [2024-11-07 04:12:27,011] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif:
[testng] [2024-11-07 04:12:44,869] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif:
[testng] [2024-11-07 04:12:55,826] [pool-1-thread-3] Initializing /data/converted/michel/b.tif:
[testng] [2024-11-07 04:13:05,565] [pool-1-thread-4] Initializing /data/converted/converted/2chzt.tif:
[testng] [2024-11-07 04:13:25,603] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif:
[testng] [2024-11-07 04:13:42,456] [pool-1-thread-5] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif:
[testng] [2024-11-07 04:13:53,251] [pool-1-thread-6] Initializing /data/converted/karsten/Bild2.tif:
[testng] [2024-11-07 04:14:35,895] [pool-1-thread-6] Initializing /data/converted/dan/adultnr1.tif:
[testng] [2024-11-07 04:15:09,093] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif:
[testng] [2024-11-07 04:15:11,914] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0001a.tif:
[testng] [2024-11-07 04:16:00,075] [pool-1-thread-6] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif:
[testng] [2024-11-07 04:16:43,472] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif:
[testng] [2024-11-07 04:17:37,174] [pool-1-thread-2] Initializing /data/converted/karsten/Bild1.tif:
[testng] [2024-11-07 04:18:29,242] [pool-1-thread-2] Initializing /data/converted/dietmar/dapi-texasred-0015.tif:
[testng] [2024-11-07 04:18:34,849] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif:
[testng] [2024-11-07 04:20:54,237] [pool-1-thread-8] Initializing /data/converted/nicolas/image.tif:
[testng] [2024-11-07 04:21:23,968] [pool-1-thread-8] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif:
[testng] [2024-11-07 04:23:52,631] [pool-1-thread-3] Initializing /data/converted/dietmar/137.tif:
[testng] [2024-11-07 04:24:05,527] [pool-1-thread-8] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif:
[testng] [2024-11-07 04:24:23,503] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif:
[testng] [2024-11-07 04:24:56,412] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif:
[testng] [2024-11-07 04:25:49,375] [pool-1-thread-9] Initializing /data/converted/rolf/example_1-2010_11_25.tif:
[testng] [2024-11-07 04:26:10,376] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif:
[testng] [2024-11-07 04:26:16,716] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif:
[testng] [2024-11-07 04:26:24,560] [pool-1-thread-9] Initializing /data/converted/converted/mri-stack.tif:
[testng] [2024-11-07 04:26:49,659] [pool-1-thread-9] Initializing /data/converted/michel/a.tif:
[testng] [2024-11-07 04:27:15,279] [pool-1-thread-9] Initializing /data/converted/sebastien/test.tif:
[testng] [2024-11-07 04:27:26,315] [pool-1-thread-12] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif:
[testng] [2024-11-07 04:27:34,771] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif:
[testng] [2024-11-07 04:30:29,491] [pool-1-thread-7] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif:
[testng] [2024-11-07 04:31:09,957] [pool-1-thread-7] Initializing /data/othmar/mozaic.tif:
[testng] [2024-11-07 04:31:47,576] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif:
[testng] [2024-11-07 04:32:38,282] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif:
[testng] [2024-11-07 04:32:48,602] [pool-1-thread-3] Initializing /data/converted/rolf/example_2-2010_11_25.tif:
[testng] [2024-11-07 04:33:19,814] [pool-1-thread-3] Initializing /data/converted/converted/2chz.tif:
[testng] [2024-11-07 04:35:17,513] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif:
[testng] [2024-11-07 04:35:40,316] [pool-1-thread-7] Initializing /data/converted/kelsey/650x514BW.tif:
[testng] [2024-11-07 04:36:14,163] [pool-1-thread-7] Initializing /data/dorai/F_ZImage10_(X10)_C.tif:
[testng] [2024-11-07 04:36:21,684] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif:
[testng] [2024-11-07 04:36:39,500] [pool-1-thread-5] Initializing /data/converted/darren/section0001_w1.tif:
[testng] [2024-11-07 04:36:52,805] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif:
[testng] [2024-11-07 04:37:15,076] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif:
[testng] [2024-11-07 04:37:17,512] [pool-1-thread-3] Initializing /data/converted/markus/HighSpeedParas.tif:
[testng] [2024-11-07 04:37:34,580] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif:
[testng] [2024-11-07 04:38:05,817] [pool-1-thread-7] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif:
[testng] [2024-11-07 04:40:53,137] [pool-1-thread-7] Initializing /data/converted/markus/30channels_exposure-series.tif:
[testng] [2024-11-07 04:41:28,810] [pool-1-thread-8] Initializing /data/converted/david/snap-181518-0001.tif:
[testng] [2024-11-07 04:42:05,204] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif:
[testng] [2024-11-07 04:43:12,404] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif:
[testng] [2024-11-07 04:43:49,380] [pool-1-thread-12] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif:
[testng] [2024-11-07 04:44:20,557] [pool-1-thread-7] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif:
[testng] [2024-11-07 04:45:19,151] [pool-1-thread-7] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif:
[testng] [2024-11-07 04:45:29,575] [pool-1-thread-2] Initializing /data/converted/vladan/vladan.tif:
[testng] [2024-11-07 04:48:24,161] [pool-1-thread-5] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif:
[testng] [2024-11-07 04:48:40,291] [pool-1-thread-9] Initializing /data/converted/darren/section0002_w1.tif:
[testng] [2024-11-07 04:48:43,534] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0004.tif:
[testng] [2024-11-07 04:49:28,985] [pool-1-thread-9] Initializing /data/converted/converted/damian-compressed.tif:
[testng] [2024-11-07 04:50:01,690] [pool-1-thread-12] Initializing /data/converted/michel/d.tif:
[testng] [2024-11-07 04:50:15,079] [pool-1-thread-9] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif:
[testng] [2024-11-07 04:50:58,792] [pool-1-thread-12] Initializing /data/converted/karsten/247096n3s3s9.tif:
[testng] [2024-11-07 04:51:49,890] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif:
[testng] [2024-11-07 04:52:25,449] [pool-1-thread-6] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif:
[testng] [2024-11-07 04:54:35,763] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif:
[testng] [2024-11-07 04:55:08,438] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif:
[testng] [2024-11-07 04:55:22,450] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif:
[testng] [2024-11-07 04:56:24,684] [pool-1-thread-1] Initializing /data/converted/eirinn/demo-tile.tif:
[testng] [2024-11-07 04:57:22,748] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif:
[testng] [2024-11-07 04:57:25,589] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif:
[testng] [2024-11-07 05:02:17,695] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif:
[testng] [2024-11-07 05:03:16,917] [pool-1-thread-5] Initializing /data/converted/kelsey/432x342BW.tif:
[testng] [2024-11-07 05:03:48,311] [pool-1-thread-5] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif:
[testng] [2024-11-07 05:04:50,560] [pool-1-thread-5] Initializing /data/converted/lior/live+cf2b.tif:
[testng] [2024-11-07 05:05:07,987] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif:
[testng] [2024-11-07 05:05:25,347] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif:
[testng] [2024-11-07 05:05:33,467] [pool-1-thread-2] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif:
[testng] [2024-11-07 05:05:58,981] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif:
[testng] [2024-11-07 05:07:17,935] [pool-1-thread-1] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif:
[testng] [2024-11-07 05:07:49,048] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif:
[testng] [2024-11-07 05:08:54,278] [pool-1-thread-12] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif:
[testng] [2024-11-07 05:13:03,073] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif:
[testng] [2024-11-07 05:13:19,556] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif:
[testng] [2024-11-07 05:13:51,567] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif:
[testng] [2024-11-07 05:15:41,186] [pool-1-thread-5] Initializing /data/converted/othmar/mozaic.tif:
[testng] [2024-11-07 05:15:45,656] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif:
[testng] [2024-11-07 05:17:37,999] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif:
[testng] [2024-11-07 05:17:40,473] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif:
[testng] [2024-11-07 05:18:12,037] [pool-1-thread-12] Initializing /data/converted/stephan/notok1.tif:
[testng] [2024-11-07 05:18:22,700] [pool-1-thread-4] Initializing /data/converted/stephan/notok2.tif:
[testng] [2024-11-07 05:19:07,305] [pool-1-thread-7] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif:
[testng] [2024-11-07 05:19:36,566] [pool-1-thread-7] Initializing /data/converted/susan/BY4741NQ2.tif:
[testng] [2024-11-07 05:20:11,817] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif:
[testng] [2024-11-07 05:20:16,901] [pool-1-thread-5] Initializing /data/converted/othmar/z-stack.tif:
[testng] 05:20:17,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:20:17,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:20:17,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-07_05-20-17.log]
[testng] 05:20:17,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62bc9559 - End of configuration.
[testng] [2024-11-07 05:20:28,202] [pool-1-thread-12] Initializing /data/converted/michel/e.tif:
[testng] [2024-11-07 05:20:38,849] [pool-1-thread-4] Initializing /data/converted/dietmar/138.tif:
[testng] [2024-11-07 05:20:45,049] [pool-1-thread-7] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif:
[testng] 06:10:17,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:10:17,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:10:17,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-07_06-10-17.log]
[testng] 06:10:17,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eeba027 - End of configuration.
[testng] 06:13:23,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:13:23,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:13:23,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-07_06-13-23.log]
[testng] 06:13:23,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3310bb28 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 6625, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 127 minutes 38 seconds
Finished: SUCCESS