Started by upstream project "BIOFORMATS-test-repo" build number 248
originally caused by:
Started by upstream project "Trigger" build number 272
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins126577612834719936.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39122_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:11:51,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:11:51,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 04:11:51,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:11:51,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:11:51,694 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:11:51,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:11:51,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:11:51,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:11:51,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:11:51,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:11:51,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:11:51,696 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:11:51,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:11:51,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:11:51,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:11:51,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:11:51,873 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:11:51,873 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:11:51,873 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:11:51,873 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:11:51,874 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 04:11:51,874 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 04:11:51,874 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-07 04:11:51,883] [main] java.version = 21
[testng] 04:11:51,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:11:51,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:11:51,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-07_04-11-51.log]
[testng] 04:11:51,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-11-07 04:11:51,928] [main] testng.directory = /data
[testng] [2024-11-07 04:11:51,928] [main] testng.configDirectory = /config
[testng] [2024-11-07 04:11:51,936] [main] testng.multiplier = 1.0
[testng] [2024-11-07 04:11:51,937] [main] testng.in-memory = false
[testng] [2024-11-07 04:11:51,937] [main] testng.allow-missing = false
[testng] [2024-11-07 04:11:51,937] [main] user.language = en
[testng] [2024-11-07 04:11:51,937] [main] user.country = ${user.country}
[testng] [2024-11-07 04:11:51,937] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-07 04:11:55,815] [main] ----------------------------------------
[testng] [2024-11-07 04:11:55,815] [main] Total files: 32
[testng] [2024-11-07 04:11:55,815] [main] Scan time: 3.878 s (121 ms/file)
[testng] [2024-11-07 04:11:55,816] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-07 04:12:16,658] [pool-1-thread-1] Initializing /data/qa-16880/c-src v7.1sc:
[testng] 04:12:16,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:12:16,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:16,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-07_04-12-16.log]
[testng] 04:12:16,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@695b69ef - End of configuration.
[testng] [2024-11-07 04:12:17,002] [pool-1-thread-12] Initializing /data/david/Opened in imageJ.tiff:
[testng] 04:12:17,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:12:17,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:17,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-07_04-12-17.log]
[testng] 04:12:17,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11a63cc5 - End of configuration.
[testng] [2024-11-07 04:12:18,369] [pool-1-thread-11] Initializing /data/qa-29459/bad.1sc:
[testng] 04:12:18,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:12:18,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:18,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-07_04-12-18.log]
[testng] 04:12:18,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e74c0a2 - End of configuration.
[testng] [2024-11-07 04:12:18,794] [pool-1-thread-10] Initializing /data/keith/test2.1sc:
[testng] 04:12:18,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:12:18,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:18,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-07_04-12-18.log]
[testng] 04:12:18,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d4e10d9 - End of configuration.
[testng] [2024-11-07 04:12:19,122] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] 04:12:19,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:12:19,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:19,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-07_04-12-19.log]
[testng] 04:12:19,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f40231a - End of configuration.
[testng] [2024-11-07 04:12:19,464] [pool-1-thread-8] Initializing /data/geert/good example1.1sc:
[testng] 04:12:19,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:12:19,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:19,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-07_04-12-19.log]
[testng] 04:12:19,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dff486a - End of configuration.
[testng] [2024-11-07 04:12:19,829] [pool-1-thread-7] Initializing /data/keith/pg020410saur3.1sc:
[testng] 04:12:19,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:12:19,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:19,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-07_04-12-19.log]
[testng] 04:12:19,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d4f6e44 - End of configuration.
[testng] [2024-11-07 04:12:20,198] [pool-1-thread-6] Initializing /data/qa-29469/good.1sc:
[testng] 04:12:20,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:12:20,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:20,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-07_04-12-20.log]
[testng] 04:12:20,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bb792c6 - End of configuration.
[testng] [2024-11-07 04:12:20,550] [pool-1-thread-5] Initializing /data/keith/test.1sc:
[testng] 04:12:20,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:12:20,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:20,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-07_04-12-20.log]
[testng] 04:12:20,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7be1c089 - End of configuration.
[testng] [2024-11-07 04:12:20,928] [pool-1-thread-4] Initializing /data/qa-29469/bad2.1sc:
[testng] 04:12:20,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:12:20,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:20,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-07_04-12-20.log]
[testng] 04:12:20,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b790b9b - End of configuration.
[testng] [2024-11-07 04:12:21,340] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng] 04:12:21,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:12:21,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:21,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-07_04-12-21.log]
[testng] 04:12:21,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c3035a2 - End of configuration.
[testng] [2024-11-07 04:12:22,599] [pool-1-thread-2] Initializing /data/geert/bad example1.1sc.jpg:
[testng] 04:12:22,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:12:22,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:12:22,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-07_04-12-22.log]
[testng] 04:12:22,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41cb5e43 - End of configuration.
[testng] [2024-11-07 04:12:27,226] [pool-1-thread-2] Initializing /data/geert/good example1.1sc.jpg:
[testng] [2024-11-07 04:12:27,395] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] [2024-11-07 04:12:28,841] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] [2024-11-07 04:12:29,246] [pool-1-thread-5] Initializing /data/qa-29469/bad3.1sc:
[testng] [2024-11-07 04:12:29,627] [pool-1-thread-4] Initializing /data/samples/Criterion.1sc:
[testng] [2024-11-07 04:12:30,029] [pool-1-thread-6] Initializing /data/adrian/test_img.1sc:
[testng] [2024-11-07 04:12:30,436] [pool-1-thread-8] Initializing /data/geert/bad example1.1sc:
[testng] [2024-11-07 04:12:30,851] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] [2024-11-07 04:12:32,258] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] [2024-11-07 04:12:32,724] [pool-1-thread-11] Initializing /data/samples/imagesEight.1sc:
[testng] [2024-11-07 04:12:37,225] [pool-1-thread-11] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] [2024-11-07 04:12:38,934] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng] [2024-11-07 04:12:40,457] [pool-1-thread-3] Initializing /data/keith/PF020328saur v3.1sc:
[testng] [2024-11-07 04:12:40,879] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] [2024-11-07 04:12:42,383] [pool-1-thread-12] Initializing /data/geert/bad example1.jpg:
[testng] [2024-11-07 04:12:42,529] [pool-1-thread-6] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng] [2024-11-07 04:12:42,912] [pool-1-thread-1] Initializing /data/qa-29459/bad.jpg:
[testng] [2024-11-07 04:12:43,038] [pool-1-thread-10] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] [2024-11-07 04:12:43,470] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2024-11-07 04:12:43,919] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 4 seconds
Finished: SUCCESS