Started by upstream project "BIOFORMATS-test-repo" build number 249
originally caused by:
Started by upstream project "Trigger" build number 273
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4498253147706305846.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39203_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:57:30,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:57:30,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:57:30,730 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:57:30,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:57:30,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:57:30,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:57:30,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:57:30,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:57:30,733 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:57:30,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:57:30,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:57:30,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:57:30,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:57:30,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:57:30,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:57:30,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:57:30,990 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:57:30,990 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:57:30,990 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:57:30,990 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:57:30,991 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:57:30,991 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:57:30,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-08 00:57:31,001] [main] java.version = 1.8.0_342
[testng] 00:57:31,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:57:31,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:31,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_00-57-31.log]
[testng] 00:57:31,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-08 00:57:31,052] [main] testng.directory = /data
[testng] [2024-11-08 00:57:31,052] [main] testng.configDirectory = /config
[testng] [2024-11-08 00:57:31,064] [main] testng.multiplier = 1.0
[testng] [2024-11-08 00:57:31,064] [main] testng.in-memory = false
[testng] [2024-11-08 00:57:31,065] [main] testng.allow-missing = false
[testng] [2024-11-08 00:57:31,065] [main] user.language = en
[testng] [2024-11-08 00:57:31,065] [main] user.country = ${user.country}
[testng] [2024-11-08 00:57:31,065] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-08 00:57:32,009] [main] ----------------------------------------
[testng] [2024-11-08 00:57:32,009] [main] Total files: 25
[testng] [2024-11-08 00:57:32,009] [main] Scan time: 0.944 s (37 ms/file)
[testng] [2024-11-08 00:57:32,010] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-08 00:57:38,350] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 00:57:38,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:57:38,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:38,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_00-57-38.log]
[testng] 00:57:38,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190bd184 - End of configuration.
[testng] [2024-11-08 00:57:38,675] [pool-1-thread-12] Initializing /data/jqd/mire32.pict:
[testng] 00:57:38,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:57:38,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:38,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_00-57-38.log]
[testng] 00:57:38,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9edab5 - End of configuration.
[testng] [2024-11-08 00:57:38,811] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] 00:57:38,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:57:38,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:38,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_00-57-38.log]
[testng] 00:57:38,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684d5052 - End of configuration.
[testng] [2024-11-08 00:57:38,983] [pool-1-thread-10] Initializing /data/misc/planet2.pict:
[testng] 00:57:38,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:57:38,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:38,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_00-57-38.log]
[testng] 00:57:38,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250dad73 - End of configuration.
[testng] [2024-11-08 00:57:39,246] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT:
[testng] 00:57:39,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:57:39,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:39,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_00-57-39.log]
[testng] 00:57:39,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e780aad - End of configuration.
[testng] [2024-11-08 00:57:39,516] [pool-1-thread-8] Initializing /data/misc/planet.png:
[testng] 00:57:39,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:57:39,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:39,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_00-57-39.log]
[testng] 00:57:39,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a134f0 - End of configuration.
[testng] [2024-11-08 00:57:39,547] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct:
[testng] 00:57:39,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:57:39,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:39,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_00-57-39.log]
[testng] 00:57:39,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bde6793 - End of configuration.
[testng] [2024-11-08 00:57:39,734] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT:
[testng] 00:57:39,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:57:39,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:39,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_00-57-39.log]
[testng] 00:57:39,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c090de - End of configuration.
[testng] [2024-11-08 00:57:39,888] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 00:57:39,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:57:39,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:39,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_00-57-39.log]
[testng] 00:57:39,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a7cb19a - End of configuration.
[testng] [2024-11-08 00:57:40,151] [pool-1-thread-4] Initializing /data/misc/swlogo.pict:
[testng] 00:57:40,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:57:40,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:40,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_00-57-40.log]
[testng] 00:57:40,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b72c1e - End of configuration.
[testng] [2024-11-08 00:57:40,468] [pool-1-thread-3] Initializing /data/jqd/32bit.pict:
[testng] 00:57:40,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:57:40,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:40,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_00-57-40.log]
[testng] 00:57:40,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@563f85a4 - End of configuration.
[testng] [2024-11-08 00:57:40,767] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict:
[testng] 00:57:40,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:57:40,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:57:40,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_00-57-40.log]
[testng] 00:57:40,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e20353 - End of configuration.
[testng] [2024-11-08 00:57:43,037] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-11-08 00:57:44,384] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-11-08 00:57:44,584] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT:
[testng] [2024-11-08 00:57:44,776] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] [2024-11-08 00:57:45,246] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT:
[testng] [2024-11-08 00:57:45,559] [pool-1-thread-7] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-11-08 00:57:45,872] [pool-1-thread-3] Initializing /data/misc/planet.pict:
[testng] [2024-11-08 00:57:46,178] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] [2024-11-08 00:57:46,566] [pool-1-thread-2] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-11-08 00:57:46,961] [pool-1-thread-9] Initializing /data/jqd/sixteenBit.pict:
[testng] [2024-11-08 00:57:47,389] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-11-08 00:57:47,892] [pool-1-thread-1] Initializing /data/jqd/mireSixteen.pict:
[testng] [2024-11-08 00:57:50,411] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 24 seconds
Finished: SUCCESS