Started by upstream project "BIOFORMATS-test-repo" build number 249
originally caused by:
 Started by upstream project "Trigger" build number 273
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins6766159989230172972.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39224_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:49:24,006 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:49:24,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 01:49:24,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:49:24,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:49:24,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:49:24,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:49:24,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:49:24,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:49:24,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:49:24,010 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:49:24,010 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:49:24,010 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:49:24,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:49:24,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:49:24,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:49:24,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:49:24,261 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:49:24,261 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:49:24,261 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:49:24,261 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:49:24,261 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 01:49:24,262 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 01:49:24,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-08 01:49:24,272] [main] java.version = 1.8.0_342
   [testng] 01:49:24,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:49:24,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:24,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_01-49-24.log]
   [testng] 01:49:24,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-11-08 01:49:24,320] [main] testng.directory = /data
   [testng] [2024-11-08 01:49:24,321] [main] testng.configDirectory = /config
   [testng] [2024-11-08 01:49:24,332] [main] testng.multiplier = 1.0
   [testng] [2024-11-08 01:49:24,332] [main] testng.in-memory = false
   [testng] [2024-11-08 01:49:24,333] [main] testng.allow-missing = false
   [testng] [2024-11-08 01:49:24,333] [main] user.language = en
   [testng] [2024-11-08 01:49:24,333] [main] user.country = ${user.country}
   [testng] [2024-11-08 01:49:24,333] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-11-08 01:49:25,903] [main] ----------------------------------------
   [testng] [2024-11-08 01:49:25,903] [main] Total files: 15
   [testng] [2024-11-08 01:49:25,903] [main] Scan time: 1.57 s (104 ms/file)
   [testng] [2024-11-08 01:49:25,903] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-08 01:49:45,320] [pool-1-thread-1] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: 
   [testng] 01:49:45,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:49:45,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:45,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_01-49-45.log]
   [testng] 01:49:45,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@646c7229 - End of configuration.
   [testng] [2024-11-08 01:49:48,957] [pool-1-thread-12] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 01:49:48,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:49:48,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:48,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_01-49-48.log]
   [testng] 01:49:48,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d13f938 - End of configuration.
   [testng] [2024-11-08 01:49:49,721] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 01:49:49,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:49:49,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:49,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_01-49-49.log]
   [testng] 01:49:49,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@728f608f - End of configuration.
   [testng] [2024-11-08 01:49:50,462] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 01:49:50,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:49:50,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:50,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_01-49-50.log]
   [testng] 01:49:50,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7035bb - End of configuration.
   [testng] [2024-11-08 01:49:51,247] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc: 
   [testng] 01:49:51,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:49:51,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:51,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_01-49-51.log]
   [testng] 01:49:51,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b384cdf - End of configuration.
   [testng] [2024-11-08 01:49:52,007] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 01:49:52,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:49:52,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:52,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_01-49-52.log]
   [testng] 01:49:52,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@333da071 - End of configuration.
   [testng] [2024-11-08 01:49:52,727] [pool-1-thread-7] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 01:49:52,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:49:52,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:52,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_01-49-52.log]
   [testng] 01:49:52,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed0d0ee - End of configuration.
   [testng] [2024-11-08 01:49:53,575] [pool-1-thread-6] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 01:49:53,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:49:53,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:53,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_01-49-53.log]
   [testng] 01:49:53,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76284d7a - End of configuration.
   [testng] [2024-11-08 01:49:54,284] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc: 
   [testng] 01:49:54,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:49:54,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:54,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_01-49-54.log]
   [testng] 01:49:54,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d651253 - End of configuration.
   [testng] [2024-11-08 01:49:55,020] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 01:49:55,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:49:55,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:55,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_01-49-55.log]
   [testng] 01:49:55,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672a1ece - End of configuration.
   [testng] [2024-11-08 01:49:55,704] [pool-1-thread-3] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:49:55,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:49:55,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:55,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_01-49-55.log]
   [testng] 01:49:55,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@554593db - End of configuration.
   [testng] [2024-11-08 01:49:56,545] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc: 
   [testng] 01:49:56,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:49:56,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:49:56,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_01-49-56.log]
   [testng] 01:49:56,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6673a3fe - End of configuration.

BUILD SUCCESSFUL
Total time: 1 minute 2 seconds
Finished: SUCCESS