Started by upstream project "BIOFORMATS-test-repo" build number 249
originally caused by:
Started by upstream project "Trigger" build number 273
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9980611187628283606.sh
+ '[' ultraview = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39243_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:28:39,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:28:39,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 02:28:39,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:28:39,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:28:39,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:28:39,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:28:39,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:28:39,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:28:39,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:28:39,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:28:39,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:28:39,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:28:40,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:28:40,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:28:40,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:28:40,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:28:40,126 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:28:40,127 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:28:40,127 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:28:40,127 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:28:40,127 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 02:28:40,128 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 02:28:40,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-08 02:28:40,137] [main] java.version = 1.8.0_342
[testng] 02:28:40,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:28:40,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:28:40,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_02-28-40.log]
[testng] 02:28:40,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-08 02:28:40,187] [main] testng.directory = /data
[testng] [2024-11-08 02:28:40,187] [main] testng.configDirectory = /config
[testng] [2024-11-08 02:28:40,199] [main] testng.multiplier = 1.0
[testng] [2024-11-08 02:28:40,200] [main] testng.in-memory = false
[testng] [2024-11-08 02:28:40,200] [main] testng.allow-missing = false
[testng] [2024-11-08 02:28:40,200] [main] user.language = en
[testng] [2024-11-08 02:28:40,200] [main] user.country = ${user.country}
[testng] [2024-11-08 02:28:40,200] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-08 02:29:43,429] [main] ----------------------------------------
[testng] [2024-11-08 02:29:43,429] [main] Total files: 19
[testng] [2024-11-08 02:29:43,429] [main] Scan time: 63.229 s (3327 ms/file)
[testng] [2024-11-08 02:29:43,429] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-08 02:30:10,784] [pool-1-thread-1] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm:
[testng] 02:30:10,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:30:10,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:10,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_02-30-10.log]
[testng] 02:30:10,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f3b6a63 - End of configuration.
[testng] [2024-11-08 02:30:11,906] [pool-1-thread-12] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm:
[testng] 02:30:11,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:30:11,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:11,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_02-30-11.log]
[testng] 02:30:11,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601d1641 - End of configuration.
[testng] [2024-11-08 02:30:13,167] [pool-1-thread-11] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM:
[testng] 02:30:13,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:30:13,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:13,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_02-30-13.log]
[testng] 02:30:13,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@534dc61b - End of configuration.
[testng] [2024-11-08 02:30:14,378] [pool-1-thread-10] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm:
[testng] 02:30:14,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:30:14,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:14,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_02-30-14.log]
[testng] 02:30:14,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b644528 - End of configuration.
[testng] [2024-11-08 02:30:15,560] [pool-1-thread-9] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM:
[testng] 02:30:15,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:30:15,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:15,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_02-30-15.log]
[testng] 02:30:15,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e92bb5 - End of configuration.
[testng] [2024-11-08 02:30:16,628] [pool-1-thread-8] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm:
[testng] 02:30:16,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:30:16,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:16,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_02-30-16.log]
[testng] 02:30:16,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fbbd940 - End of configuration.
[testng] [2024-11-08 02:30:17,829] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm:
[testng] 02:30:17,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:30:17,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:17,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_02-30-17.log]
[testng] 02:30:17,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@491d2225 - End of configuration.
[testng] [2024-11-08 02:30:18,938] [pool-1-thread-6] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM:
[testng] 02:30:18,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:30:18,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:18,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_02-30-18.log]
[testng] 02:30:18,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@380ddaa1 - End of configuration.
[testng] [2024-11-08 02:30:20,136] [pool-1-thread-5] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM:
[testng] 02:30:20,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:30:20,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:20,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_02-30-20.log]
[testng] 02:30:20,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4536e45 - End of configuration.
[testng] [2024-11-08 02:30:21,661] [pool-1-thread-4] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM:
[testng] 02:30:21,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:30:21,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:21,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_02-30-21.log]
[testng] 02:30:21,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bebba56 - End of configuration.
[testng] [2024-11-08 02:30:23,247] [pool-1-thread-3] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm:
[testng] 02:30:23,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:30:23,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:23,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_02-30-23.log]
[testng] 02:30:23,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b8df5a - End of configuration.
[testng] [2024-11-08 02:30:24,564] [pool-1-thread-2] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm:
[testng] 02:30:24,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:30:24,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:24,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_02-30-24.log]
[testng] 02:30:24,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f722e5a - End of configuration.
[testng] [2024-11-08 02:30:57,952] [pool-1-thread-5] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM:
[testng] [2024-11-08 02:31:11,518] [pool-1-thread-8] Initializing /data/chad/DIC/EZRA200820080626102637.HTM:
[testng] [2024-11-08 02:31:17,525] [pool-1-thread-1] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm:
[testng] [2024-11-08 02:31:31,012] [pool-1-thread-5] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM:
[testng] [2024-11-08 02:31:37,984] [pool-1-thread-3] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM:
[testng] [2024-11-08 02:31:47,852] [pool-1-thread-8] Initializing /data/todd/movement-1.htm:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 33 minutes 3 seconds
Finished: SUCCESS