Started by upstream project "BIOFORMATS-test-repo" build number 249
originally caused by:
 Started by upstream project "Trigger" build number 273
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins16961220299019574917.sh
+ '[' cellr = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39302_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 05:28:25,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:28:25,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 05:28:25,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:28:25,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:28:25,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:28:25,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:28:25,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:28:25,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:28:25,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:28:25,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:28:25,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:28:25,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:28:25,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:28:25,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:28:25,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:28:25,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:28:25,635 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:28:25,635 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:28:25,636 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:28:25,636 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:28:25,636 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 05:28:25,637 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 05:28:25,637 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 251 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-08 05:28:25,646] [main] java.version = 1.8.0_342
   [testng] 05:28:25,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:28:25,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:25,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_05-28-25.log]
   [testng] 05:28:25,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-11-08 05:28:25,696] [main] testng.directory = /data
   [testng] [2024-11-08 05:28:25,696] [main] testng.configDirectory = /config
   [testng] [2024-11-08 05:28:25,708] [main] testng.multiplier = 1.0
   [testng] [2024-11-08 05:28:25,708] [main] testng.in-memory = false
   [testng] [2024-11-08 05:28:25,708] [main] testng.allow-missing = false
   [testng] [2024-11-08 05:28:25,708] [main] user.language = en
   [testng] [2024-11-08 05:28:25,708] [main] user.country = ${user.country}
   [testng] [2024-11-08 05:28:25,709] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-11-08 05:30:33,766] [main] ----------------------------------------
   [testng] [2024-11-08 05:30:33,767] [main] Total files: 256
   [testng] [2024-11-08 05:30:33,767] [main] Scan time: 128.057 s (500 ms/file)
   [testng] [2024-11-08 05:30:33,767] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 13 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-08 05:36:59,814] [pool-1-thread-1] Initializing /data/viktorie/090902/090902_d.mtb: 
   [testng] 05:36:59,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:36:59,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:36:59,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_05-36-59.log]
   [testng] 05:36:59,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d8f34f6 - End of configuration.
   [testng] [2024-11-08 05:37:00,990] [pool-1-thread-12] Initializing /data/viktorie/2Channels.tif: 
   [testng] 05:37:00,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:37:00,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:00,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_05-37-00.log]
   [testng] 05:37:00,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55bae7d2 - End of configuration.
   [testng] [2024-11-08 05:37:03,440] [pool-1-thread-11] Initializing /data/colin/08-10-09/08-10-09_d.mtb: 
   [testng] 05:37:03,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:37:03,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:03,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_05-37-03.log]
   [testng] 05:37:03,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d3748cd - End of configuration.
   [testng] [2024-11-08 05:37:08,314] [pool-1-thread-10] Initializing /data/viktorie/Structure.jpg: 
   [testng] 05:37:08,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:37:08,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:08,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_05-37-08.log]
   [testng] 05:37:08,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a947823 - End of configuration.
   [testng] [2024-11-08 05:37:08,539] [pool-1-thread-9] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: 
   [testng] 05:37:08,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:37:08,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:08,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_05-37-08.log]
   [testng] 05:37:08,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c9aedc0 - End of configuration.
   [testng] [2024-11-08 05:37:11,028] [pool-1-thread-8] Initializing /data/clare/set_27_on_d.mtb: 
   [testng] 05:37:11,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:37:11,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:11,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_05-37-11.log]
   [testng] 05:37:11,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a620cca - End of configuration.
   [testng] [2024-11-08 05:37:12,345] [pool-1-thread-7] Initializing /data/qa-17107/plain/Plain_d.mtb: 
   [testng] 05:37:12,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:37:12,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:12,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_05-37-12.log]
   [testng] 05:37:12,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25c06eed - End of configuration.
   [testng] [2024-11-08 05:37:13,503] [pool-1-thread-6] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: 
   [testng] 05:37:13,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:37:13,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:13,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_05-37-13.log]
   [testng] 05:37:13,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cf9ee7b - End of configuration.
   [testng] [2024-11-08 05:37:14,367] [pool-1-thread-5] Initializing /data/qa-17107/example2/example2_d.mtb: 
   [testng] 05:37:14,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:37:14,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:14,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_05-37-14.log]
   [testng] 05:37:14,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0e3084 - End of configuration.
   [testng] [2024-11-08 05:37:15,546] [pool-1-thread-4] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: 
   [testng] 05:37:15,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:37:15,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:15,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_05-37-15.log]
   [testng] 05:37:15,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ab086e - End of configuration.
   [testng] [2024-11-08 05:37:16,975] [pool-1-thread-3] Initializing /data/kees/Mariaelena_d.mtb: 
   [testng] 05:37:16,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:37:16,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:16,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_05-37-16.log]
   [testng] 05:37:16,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58e73bec - End of configuration.
   [testng] [2024-11-08 05:37:19,319] [pool-1-thread-2] Initializing /data/colin/07-06-21/07-06-21_d.mtb: 
   [testng] 05:37:19,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:37:19,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:37:19,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_05-37-19.log]
   [testng] 05:37:19,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10776ad8 - End of configuration.
   [testng] [2024-11-08 05:37:27,380] [pool-1-thread-10] Initializing /data/viktorie/test/test_d.mtb: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 689, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 11 minutes 30 seconds
Finished: SUCCESS