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Started by upstream project "BIOFORMATS-test-repo" build number 249 originally caused by: Started by upstream project "Trigger" build number 273 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17648657114610450090.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_39308_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:40:22,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:40:22,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 05:40:22,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:40:22,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:40:22,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:40:22,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:40:22,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:40:22,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:40:22,377 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:40:22,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:40:22,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:40:22,378 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:40:22,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:40:22,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:40:22,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:40:22,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:40:22,650 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:40:22,650 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:40:22,651 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:40:22,651 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:40:22,651 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 05:40:22,652 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 05:40:22,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-08 05:40:22,662] [main] java.version = 1.8.0_342 [testng] 05:40:22,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:40:22,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:22,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_05-40-22.log] [testng] 05:40:22,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-08 05:40:22,717] [main] testng.directory = /data [testng] [2024-11-08 05:40:22,717] [main] testng.configDirectory = /config [testng] [2024-11-08 05:40:22,729] [main] testng.multiplier = 1.0 [testng] [2024-11-08 05:40:22,730] [main] testng.in-memory = false [testng] [2024-11-08 05:40:22,730] [main] testng.allow-missing = false [testng] [2024-11-08 05:40:22,730] [main] user.language = en [testng] [2024-11-08 05:40:22,730] [main] user.country = ${user.country} [testng] [2024-11-08 05:40:22,730] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-08 05:40:48,843] [main] ---------------------------------------- [testng] [2024-11-08 05:40:48,843] [main] Total files: 31 [testng] [2024-11-08 05:40:48,844] [main] Scan time: 26.113 s (842 ms/file) [testng] [2024-11-08 05:40:48,844] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-08 05:41:18,804] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2: [testng] 05:41:18,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:41:18,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:18,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_05-41-18.log] [testng] 05:41:18,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bacc0d7 - End of configuration. [testng] [2024-11-08 05:41:19,699] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2: [testng] 05:41:19,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:41:19,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:19,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_05-41-19.log] [testng] 05:41:19,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17d955c0 - End of configuration. [testng] [2024-11-08 05:41:20,541] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 05:41:20,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:41:20,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:20,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_05-41-20.log] [testng] 05:41:20,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75567d3c - End of configuration. [testng] [2024-11-08 05:41:21,517] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx: [testng] 05:41:21,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:41:21,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:21,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_05-41-21.log] [testng] 05:41:21,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36ef025e - End of configuration. [testng] [2024-11-08 05:41:22,332] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] 05:41:22,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:41:22,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:22,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_05-41-22.log] [testng] 05:41:22,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5207094f - End of configuration. [testng] [2024-11-08 05:41:23,061] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2: [testng] 05:41:23,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:41:23,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:23,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_05-41-23.log] [testng] 05:41:23,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@294b678a - End of configuration. [testng] [2024-11-08 05:41:24,240] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg: [testng] 05:41:24,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:41:24,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:24,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_05-41-24.log] [testng] 05:41:24,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b332d9 - End of configuration. [testng] [2024-11-08 05:41:24,417] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] 05:41:24,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:41:24,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:24,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_05-41-24.log] [testng] 05:41:24,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@101a9eba - End of configuration. [testng] [2024-11-08 05:41:25,098] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jp2: [testng] 05:41:25,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:41:25,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:25,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_05-41-25.log] [testng] 05:41:25,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c6fd7 - End of configuration. [testng] [2024-11-08 05:41:25,908] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig: [testng] 05:41:25,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:41:25,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:25,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_05-41-25.log] [testng] 05:41:25,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72dc91e0 - End of configuration. [testng] [2024-11-08 05:41:28,022] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2: [testng] 05:41:28,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:41:28,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:28,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_05-41-28.log] [testng] 05:41:28,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a3396cb - End of configuration. [testng] [2024-11-08 05:41:28,823] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 05:41:28,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:41:28,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:28,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_05-41-28.log] [testng] 05:41:28,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14800575 - End of configuration. [testng] [2024-11-08 05:41:37,532] [pool-1-thread-7] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-11-08 05:41:39,442] [pool-1-thread-5] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-11-08 05:41:40,493] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-11-08 05:41:42,081] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jpc: [testng] [2024-11-08 05:41:42,785] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-11-08 05:41:44,033] [pool-1-thread-3] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-11-08 05:41:45,982] [pool-1-thread-4] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-11-08 05:41:49,310] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] [2024-11-08 05:41:51,602] [pool-1-thread-2] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-11-08 05:41:53,792] [pool-1-thread-12] Initializing /data/kraig/head.jp2: [testng] [2024-11-08 05:41:54,594] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-11-08 05:41:56,315] [pool-1-thread-11] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-11-08 05:41:58,941] [pool-1-thread-6] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-11-08 05:42:03,255] [pool-1-thread-5] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-11-08 05:42:04,613] [pool-1-thread-12] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-11-08 05:42:07,653] [pool-1-thread-8] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-11-08 05:42:08,707] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-11-08 05:42:10,592] [pool-1-thread-4] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 50 seconds Finished: SUCCESS