Started by upstream project "BIOFORMATS-test-repo" build number 249
originally caused by:
Started by upstream project "Trigger" build number 273
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins17699964964010114481.sh
+ '[' imagepro = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39310_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:46:47,307 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:46:47,309 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 05:46:47,309 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:46:47,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:46:47,310 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:46:47,310 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:46:47,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:46:47,310 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:46:47,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:46:47,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:46:47,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:46:47,311 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:46:47,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:46:47,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:46:47,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:46:47,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:46:47,561 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:46:47,561 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:46:47,561 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:46:47,562 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:46:47,562 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 05:46:47,563 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 05:46:47,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-08 05:46:47,572] [main] java.version = 1.8.0_342
[testng] 05:46:47,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:46:47,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:46:47,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-08_05-46-47.log]
[testng] 05:46:47,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-11-08 05:46:47,622] [main] testng.directory = /data
[testng] [2024-11-08 05:46:47,622] [main] testng.configDirectory = /config
[testng] [2024-11-08 05:46:47,633] [main] testng.multiplier = 1.0
[testng] [2024-11-08 05:46:47,634] [main] testng.in-memory = false
[testng] [2024-11-08 05:46:47,634] [main] testng.allow-missing = false
[testng] [2024-11-08 05:46:47,634] [main] user.language = en
[testng] [2024-11-08 05:46:47,634] [main] user.country = ${user.country}
[testng] [2024-11-08 05:46:47,634] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-11-08 05:46:55,316] [main] ----------------------------------------
[testng] [2024-11-08 05:46:55,316] [main] Total files: 22
[testng] [2024-11-08 05:46:55,316] [main] Scan time: 7.682 s (349 ms/file)
[testng] [2024-11-08 05:46:55,316] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-08 05:47:18,751] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.seq:
[testng] 05:47:18,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:47:18,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:18,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-08_05-47-18.log]
[testng] 05:47:18,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a388732 - End of configuration.
[testng] [2024-11-08 05:47:19,351] [pool-1-thread-12] Initializing /data/converted/clown8c.tif:
[testng] 05:47:19,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:47:19,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:19,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-08_05-47-19.log]
[testng] 05:47:19,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e9a859 - End of configuration.
[testng] [2024-11-08 05:47:20,728] [pool-1-thread-11] Initializing /data/samples/TISSUE.TIF:
[testng] 05:47:20,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:47:20,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:20,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-08_05-47-20.log]
[testng] 05:47:20,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@636932b8 - End of configuration.
[testng] [2024-11-08 05:47:22,091] [pool-1-thread-10] Initializing /data/converted/dub01.seq:
[testng] 05:47:22,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:47:22,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:22,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-08_05-47-22.log]
[testng] 05:47:22,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b66d06f - End of configuration.
[testng] [2024-11-08 05:47:22,724] [pool-1-thread-9] Initializing /data/xiuwen/head2.seq:
[testng] 05:47:22,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:47:22,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:22,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-08_05-47-22.log]
[testng] 05:47:22,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620d89a6 - End of configuration.
[testng] [2024-11-08 05:47:23,359] [pool-1-thread-8] Initializing /data/samples/PROBE.TIF:
[testng] 05:47:23,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:47:23,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:23,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-08_05-47-23.log]
[testng] 05:47:23,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434b4bc1 - End of configuration.
[testng] [2024-11-08 05:47:24,050] [pool-1-thread-7] Initializing /data/converted/clown.ipw:
[testng] 05:47:24,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:47:24,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:24,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-08_05-47-24.log]
[testng] 05:47:24,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4825fcbf - End of configuration.
[testng] [2024-11-08 05:47:24,613] [pool-1-thread-6] Initializing /data/samples/HEART.SEQ:
[testng] 05:47:24,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:47:24,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:24,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-08_05-47-24.log]
[testng] 05:47:24,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c17539f - End of configuration.
[testng] [2024-11-08 05:47:25,164] [pool-1-thread-5] Initializing /data/converted/mitosis-test.seq:
[testng] 05:47:25,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:47:25,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:25,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-08_05-47-25.log]
[testng] 05:47:25,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40ce7006 - End of configuration.
[testng] [2024-11-08 05:47:25,796] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.ipw:
[testng] 05:47:25,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:47:25,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:25,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-08_05-47-25.log]
[testng] 05:47:25,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74720ca5 - End of configuration.
[testng] [2024-11-08 05:47:26,328] [pool-1-thread-3] Initializing /data/converted/mitosis-test.tif:
[testng] 05:47:26,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:47:26,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:26,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-08_05-47-26.log]
[testng] 05:47:26,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e92f27 - End of configuration.
[testng] [2024-11-08 05:47:27,842] [pool-1-thread-2] Initializing /data/converted/clown.tif:
[testng] 05:47:27,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:47:27,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:47:27,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-08_05-47-27.log]
[testng] 05:47:27,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6286fd85 - End of configuration.
[testng] [2024-11-08 05:47:34,810] [pool-1-thread-7] Initializing /data/converted/clown.seq:
[testng] [2024-11-08 05:47:35,462] [pool-1-thread-2] Initializing /data/converted/clown8c.seq:
[testng] [2024-11-08 05:47:36,130] [pool-1-thread-5] Initializing /data/converted/dub01.ipw:
[testng] [2024-11-08 05:47:36,676] [pool-1-thread-6] Initializing /data/alex/AFAset0003.ips:
[testng] [2024-11-08 05:47:37,256] [pool-1-thread-8] Initializing /data/converted/dub01.pic:
[testng] [2024-11-08 05:47:37,831] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw:
[testng] [2024-11-08 05:47:38,382] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff:
[testng] [2024-11-08 05:47:39,783] [pool-1-thread-1] Initializing /data/converted/mitosis-test.ipw:
[testng] [2024-11-08 05:47:41,575] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 4 minutes 7 seconds
Finished: SUCCESS