Started by upstream project "BIOFORMATS-test-repo" build number 250
originally caused by:
Started by upstream project "Trigger" build number 274
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4924307116283462145.sh
+ '[' fv1000 = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39358_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:51:32,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:51:32,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 00:51:32,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:51:32,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:51:32,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:51:32,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:51:32,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:51:32,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:51:32,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:51:32,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:51:32,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:51:32,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:51:33,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:51:33,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:51:33,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:51:33,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:51:33,103 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:51:33,103 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:51:33,103 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:51:33,103 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:51:33,103 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 00:51:33,104 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 00:51:33,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-11-09 00:51:33,113] [main] java.version = 11.0.16
[testng] 00:51:33,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:51:33,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:51:33,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-09_00-51-33.log]
[testng] 00:51:33,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-11-09 00:51:33,161] [main] testng.directory = /data
[testng] [2024-11-09 00:51:33,162] [main] testng.configDirectory = /config
[testng] [2024-11-09 00:51:33,171] [main] testng.multiplier = 1.0
[testng] [2024-11-09 00:51:33,173] [main] testng.in-memory = false
[testng] [2024-11-09 00:51:33,173] [main] testng.allow-missing = false
[testng] [2024-11-09 00:51:33,173] [main] user.language = en
[testng] [2024-11-09 00:51:33,173] [main] user.country = ${user.country}
[testng] [2024-11-09 00:51:33,173] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-11-09 00:52:10,149] [main] ----------------------------------------
[testng] [2024-11-09 00:52:10,149] [main] Total files: 259
[testng] [2024-11-09 00:52:10,149] [main] Scan time: 36.976 s (142 ms/file)
[testng] [2024-11-09 00:52:10,149] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 144 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-11-09 01:01:34,708] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib:
[testng] 01:01:34,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:01:34,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:34,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-09_01-01-34.log]
[testng] 01:01:34,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b478306 - End of configuration.
[testng] [2024-11-09 01:01:35,109] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib:
[testng] 01:01:35,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:01:35,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:35,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-09_01-01-35.log]
[testng] 01:01:35,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f8c4112 - End of configuration.
[testng] [2024-11-09 01:01:35,451] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib:
[testng] 01:01:35,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:01:35,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:35,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-09_01-01-35.log]
[testng] 01:01:35,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1294c45b - End of configuration.
[testng] [2024-11-09 01:01:35,964] [pool-1-thread-10] Initializing /data/marc/V0606J.oib:
[testng] 01:01:35,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:01:35,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:35,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-09_01-01-35.log]
[testng] 01:01:35,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ece375c - End of configuration.
[testng] [2024-11-09 01:01:37,497] [pool-1-thread-9] Initializing /data/johannes/step4.bmp:
[testng] 01:01:37,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:01:37,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:37,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-09_01-01-37.log]
[testng] 01:01:37,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47170b83 - End of configuration.
[testng] [2024-11-09 01:01:37,548] [pool-1-thread-8] Initializing /data/karl/Image0009.oib:
[testng] 01:01:37,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:01:37,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:37,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-09_01-01-37.log]
[testng] 01:01:37,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7028448b - End of configuration.
[testng] [2024-11-09 01:01:37,766] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib:
[testng] 01:01:37,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:01:37,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:37,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-09_01-01-37.log]
[testng] 01:01:37,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79f88d2e - End of configuration.
[testng] [2024-11-09 01:01:38,242] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib:
[testng] 01:01:38,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:01:38,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:38,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-09_01-01-38.log]
[testng] 01:01:38,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51e8ecea - End of configuration.
[testng] [2024-11-09 01:01:38,721] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF:
[testng] 01:01:38,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:01:38,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:38,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-09_01-01-38.log]
[testng] 01:01:38,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce81cb5 - End of configuration.
[testng] [2024-11-09 01:01:47,774] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif:
[testng] 01:01:47,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:01:47,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:47,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-09_01-01-47.log]
[testng] 01:01:47,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68fcde7f - End of configuration.
[testng] [2024-11-09 01:01:48,054] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib:
[testng] 01:01:48,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:01:48,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:48,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-09_01-01-48.log]
[testng] 01:01:48,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76ae84aa - End of configuration.
[testng] [2024-11-09 01:01:48,321] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib:
[testng] 01:01:48,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:01:48,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:01:48,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-09_01-01-48.log]
[testng] 01:01:48,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f7b66ba - End of configuration.
[testng] [2024-11-09 01:01:51,453] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib:
[testng] [2024-11-09 01:01:52,606] [pool-1-thread-8] Initializing /data/glen/simulstack.oif:
[testng] [2024-11-09 01:01:54,173] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF:
[testng] [2024-11-09 01:02:00,007] [pool-1-thread-12] Initializing /data/brian/MitoRed-POPO3.oib:
[testng] [2024-11-09 01:02:00,648] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib:
[testng] [2024-11-09 01:02:01,234] [pool-1-thread-1] Initializing /data/glen/simulstack.oib:
[testng] [2024-11-09 01:02:01,786] [pool-1-thread-11] Initializing /data/barbara/Image_with_working_import.oib:
[testng] [2024-11-09 01:02:02,084] [pool-1-thread-6] Initializing /data/brian/NEURON_TIMELAPS_2.oib:
[testng] [2024-11-09 01:02:02,772] [pool-1-thread-7] Initializing /data/brian/Caged Glu-3 point.oib:
[testng] [2024-11-09 01:02:04,964] [pool-1-thread-9] Initializing /data/david/Image0016.oif:
[testng] [2024-11-09 01:02:07,050] [pool-1-thread-12] Initializing /data/stefan/cytosol_08b.oif:
[testng] [2024-11-09 01:02:11,036] [pool-1-thread-11] Initializing /data/stefan/test-with-stefan071024.oib:
[testng] [2024-11-09 01:02:13,556] [pool-1-thread-1] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib:
[testng] [2024-11-09 01:02:14,790] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib:
[testng] [2024-11-09 01:02:15,675] [pool-1-thread-3] Initializing /data/qa-17748/Image0098.oib:
[testng] [2024-11-09 01:02:16,344] [pool-1-thread-10] Initializing /data/chris/missegragation-15.oib:
[testng] [2024-11-09 01:02:19,041] [pool-1-thread-6] Initializing /data/simon/used_to_work.oib:
[testng] [2024-11-09 01:02:20,272] [pool-1-thread-4] Initializing /data/brian/LILY POLLEN.oib:
[testng] [2024-11-09 01:02:23,354] [pool-1-thread-3] Initializing /data/johannes/step5b.bmp:
[testng] [2024-11-09 01:02:23,494] [pool-1-thread-7] Initializing /data/johannes/Image0010/Image0010.oif:
[testng] [2024-11-09 01:02:24,563] [pool-1-thread-10] Initializing /data/molly/11OCT10.OIF:
[testng] [2024-11-09 01:02:41,281] [pool-1-thread-1] Initializing /data/molly/11OCT9.OIF:
[testng] [2024-11-09 01:03:03,738] [pool-1-thread-6] Initializing /data/ramon/Image_01_01_01_01.oif:
[testng] [2024-11-09 01:03:06,199] [pool-1-thread-3] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib:
[testng] [2024-11-09 01:03:07,492] [pool-1-thread-4] Initializing /data/stefan/yc2_live-03.oib:
[testng] [2024-11-09 01:03:11,205] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif:
[testng] [2024-11-09 01:03:17,192] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib:
[testng] [2024-11-09 01:03:21,151] [pool-1-thread-4] Initializing /data/molly/11OCT3.OIF:
[testng] [2024-11-09 01:04:25,357] [pool-1-thread-3] Initializing /data/molly/11OCT7.OIF:
[testng] [2024-11-09 01:04:40,831] [pool-1-thread-9] Initializing /data/johannes/Image0016/Image0016.oif:
[testng] [2024-11-09 01:05:59,903] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib:
[testng] [2024-11-09 01:06:02,776] [pool-1-thread-7] Initializing /data/allan/62909#1.oib:
[testng] [2024-11-09 01:06:03,341] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif:
[testng] [2024-11-09 01:06:09,723] [pool-1-thread-7] Initializing /data/molly/11OCT5.OIF:
[testng] [2024-11-09 01:06:23,877] [pool-1-thread-6] Initializing /data/qa-17748/Image0079.oib:
[testng] [2024-11-09 01:06:28,543] [pool-1-thread-6] Initializing /data/aryeh/BP3 3h ch2.oif:
[testng] [2024-11-09 01:08:14,264] [pool-1-thread-9] Initializing /data/tom/RGB-1.avi:
[testng] [2024-11-09 01:08:17,676] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oif:
[testng] [2024-11-09 01:09:22,218] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib:
[testng] [2024-11-09 01:09:32,907] [pool-1-thread-9] Initializing /data/jae/Image0001.oib:
[testng] [2024-11-09 01:09:39,918] [pool-1-thread-9] Initializing /data/shane/Data Subset/Ex3sol.oif:
[testng] [2024-11-09 01:10:30,228] [pool-1-thread-9] Initializing /data/brian/PA-GFPv-2.oib:
[testng] [2024-11-09 01:10:37,539] [pool-1-thread-9] Initializing /data/glen/singlesimul.oif:
[testng] [2024-11-09 01:11:35,967] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/4.oib:
[testng] [2024-11-09 01:11:43,407] [pool-1-thread-9] Initializing /data/michael/CELL3.oib:
[testng] [2024-11-09 01:11:49,995] [pool-1-thread-9] Initializing /data/simon/never_worked.oib:
[testng] [2024-11-09 01:11:56,717] [pool-1-thread-9] Initializing /data/aryeh/control_test.oib:
[testng] [2024-11-09 01:12:27,712] [pool-1-thread-9] Initializing /data/brian/lambda02nm.oib:
[testng] [2024-11-09 01:12:35,926] [pool-1-thread-9] Initializing /data/stephane/817A_3-0003_01.oib:
[testng] [2024-11-09 01:12:44,219] [pool-1-thread-9] Initializing /data/johannes/step1.bmp:
[testng] [2024-11-09 01:12:48,132] [pool-1-thread-9] Initializing /data/dan/outerEV1solu6new.oib:
[testng] [2024-11-09 01:12:57,284] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib:
[testng] [2024-11-09 01:13:05,696] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif:
[testng] [2024-11-09 01:13:45,566] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibA-RibB-side.oib:
[testng] [2024-11-09 01:13:54,310] [pool-1-thread-9] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif:
[testng] [2024-11-09 01:19:35,573] [pool-1-thread-8] Initializing /data/glen/111407.oif:
[testng] [2024-11-09 01:27:34,100] [pool-1-thread-2] Initializing /data/brian/FLIP.oib:
[testng] [2024-11-09 01:27:42,763] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib:
[testng] [2024-11-09 01:27:52,272] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX7-10G30% .oib:
[testng] [2024-11-09 01:27:54,364] [pool-1-thread-11] Initializing /data/jean-claude/villositerat0heurea.oib:
[testng] [2024-11-09 01:27:58,546] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif:
[testng] [2024-11-09 01:28:00,448] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib:
[testng] [2024-11-09 01:28:08,123] [pool-1-thread-11] Initializing /data/molly/11OCT8.OIF:
[testng] [2024-11-09 01:28:51,180] [pool-1-thread-2] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib:
[testng] [2024-11-09 01:28:57,488] [pool-1-thread-2] Initializing /data/bojana/XYT_FirstBolus.oib:
[testng] [2024-11-09 01:29:05,038] [pool-1-thread-2] Initializing /data/molly/11OCT6.OIF:
[testng] [2024-11-09 01:31:18,457] [pool-1-thread-9] Initializing /data/glen/singlesimul.oib:
[testng] [2024-11-09 01:31:27,620] [pool-1-thread-9] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib:
[testng] [2024-11-09 01:31:55,049] [pool-1-thread-3] Initializing /data/christian/20min.oif:
[testng] [2024-11-09 01:32:05,978] [pool-1-thread-9] Initializing /data/marc/V0606L.oib:
[testng] [2024-11-09 01:32:28,726] [pool-1-thread-9] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif:
[testng] [2024-11-09 01:32:40,308] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif:
[testng] [2024-11-09 01:33:31,901] [pool-1-thread-3] Initializing /data/johannes/step4b.bmp:
[testng] [2024-11-09 01:33:35,125] [pool-1-thread-3] Initializing /data/barbara/Image_with_failed_import.oib:
[testng] [2024-11-09 01:33:41,017] [pool-1-thread-3] Initializing /data/aryeh/1h.oib:
[testng] [2024-11-09 01:33:51,499] [pool-1-thread-3] Initializing /data/brian/PA-GFP-3.oib:
[testng] [2024-11-09 01:33:59,394] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif:
[testng] [2024-11-09 01:36:00,462] [pool-1-thread-7] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp:
[testng] [2024-11-09 01:36:02,078] [pool-1-thread-12] Initializing /data/david/Image0016.oib:
[testng] [2024-11-09 01:36:04,207] [pool-1-thread-7] Initializing /data/monica/Image0056.oif:
[testng] [2024-11-09 01:36:11,240] [pool-1-thread-12] Initializing /data/glen/Image0002.oif:
[testng] [2024-11-09 01:37:38,749] [pool-1-thread-7] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib:
[testng] [2024-11-09 01:37:47,343] [pool-1-thread-7] Initializing /data/yasunori/series_1.oib:
[testng] [2024-11-09 01:37:57,551] [pool-1-thread-7] Initializing /data/aryeh/1h_after_pdt.oib:
[testng] [2024-11-09 01:38:28,717] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib:
[testng] [2024-11-09 01:38:38,148] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib:
[testng] [2024-11-09 01:38:49,378] [pool-1-thread-7] Initializing /data/johannes/step3.bmp:
[testng] [2024-11-09 01:38:54,408] [pool-1-thread-7] Initializing /data/satoshi/60x_5x_1.oif:
[testng] [2024-11-09 01:42:40,611] [pool-1-thread-10] Initializing /data/brian/Kaede-Neuron-9XYZ.oib:
[testng] [2024-11-09 01:42:47,923] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib:
[testng] [2024-11-09 01:42:56,091] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib:
[testng] [2024-11-09 01:43:04,442] [pool-1-thread-10] Initializing /data/francesco/fGfp.c15.oib:
[testng] [2024-11-09 01:43:11,642] [pool-1-thread-10] Initializing /data/brian/Al488-yoyo1-2.oib:
[testng] [2024-11-09 01:43:12,721] [pool-1-thread-8] Initializing /data/glen/4205basal106072.oif:
[testng] [2024-11-09 01:43:27,978] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif:
[testng] [2024-11-09 01:44:13,610] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib:
[testng] [2024-11-09 01:44:22,690] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oif:
[testng] [2024-11-09 01:45:52,724] [pool-1-thread-9] Initializing /data/stefan/YC2_spectrum-405.oib:
[testng] [2024-11-09 01:45:59,646] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oib:
[testng] [2024-11-09 01:46:06,443] [pool-1-thread-9] Initializing /data/allan/new_30min3_1z2.oib:
[testng] [2024-11-09 01:46:13,576] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib:
[testng] [2024-11-09 01:46:20,596] [pool-1-thread-9] Initializing /data/glen/LUT issue/60x11.oif:
[testng] [2024-11-09 01:50:17,003] [pool-1-thread-3] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif:
[testng] [2024-11-09 01:53:04,844] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib:
[testng] [2024-11-09 01:53:14,300] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib:
[testng] [2024-11-09 01:53:24,824] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib:
[testng] [2024-11-09 01:53:35,396] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib:
[testng] [2024-11-09 01:53:50,180] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib:
[testng] [2024-11-09 01:54:00,963] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib:
[testng] [2024-11-09 01:54:12,336] [pool-1-thread-5] Initializing /data/sten/01.oib:
[testng] [2024-11-09 01:54:22,753] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib:
[testng] [2024-11-09 01:54:34,539] [pool-1-thread-5] Initializing /data/johannes/step2.bmp:
[testng] [2024-11-09 01:54:39,423] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif:
[testng] [2024-11-09 01:58:23,398] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib:
[testng] [2024-11-09 01:58:31,204] [pool-1-thread-1] Initializing /data/brian/CFP-GFP2.oib:
[testng] [2024-11-09 01:58:37,890] [pool-1-thread-1] Initializing /data/glen/Null file/test no change.oif:
[testng] [2024-11-09 01:59:21,460] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG+FuraR3.oib:
[testng] [2024-11-09 01:59:28,192] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib:
[testng] [2024-11-09 01:59:35,988] [pool-1-thread-1] Initializing /data/glen/singleseqline.oib:
[testng] [2024-11-09 01:59:42,404] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX4-10G40%.oib:
[testng] [2024-11-09 01:59:48,797] [pool-1-thread-1] Initializing /data/glen/QuitIJ/4202A2chtest.oib:
[testng] [2024-11-09 01:59:55,354] [pool-1-thread-1] Initializing /data/glen/singleseqline.oif:
[testng] [2024-11-09 02:00:10,484] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif:
[testng] [2024-11-09 02:00:55,460] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib:
[testng] [2024-11-09 02:01:03,874] [pool-1-thread-12] Initializing /data/molly/11OCT11.OIF:
[testng] [2024-11-09 02:01:28,359] [pool-1-thread-1] Initializing /data/brian/Kaede15.oib:
[testng] [2024-11-09 02:01:35,417] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib:
[testng] [2024-11-09 02:01:37,573] [pool-1-thread-1] Initializing /data/glen/notsaturated.oif:
[testng] [2024-11-09 02:01:49,060] [pool-1-thread-11] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib:
[testng] [2024-11-09 02:01:56,524] [pool-1-thread-11] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp:
[testng] [2024-11-09 02:01:58,945] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib:
[testng] [2024-11-09 02:02:07,721] [pool-1-thread-11] Initializing /data/glen/LUT issue/Greenredfarred.oif:
[testng] 02:34:51,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:34:51,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:34:51,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-09_02-34-51.log]
[testng] 02:34:51,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@242b4eee - End of configuration.
[testng] 02:47:24,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:47:24,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:47:24,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-09_02-47-24.log]
[testng] 02:47:24,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d51ecf3 - End of configuration.
[testng] 03:48:17,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:48:17,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:48:17,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-09_03-48-17.log]
[testng] 03:48:17,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100efbf7 - End of configuration.
[testng] 03:55:02,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:55:02,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:55:02,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-09_03-55-02.log]
[testng] 03:55:02,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dea0730 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 7632, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 183 minutes 33 seconds
Finished: SUCCESS